BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0002.p
         (291 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311980|ref|YP_003776072.1| Fe-S protein [Herbaspirillum se...   397   e-112

>gi|300311980|ref|YP_003776072.1| Fe-S protein [Herbaspirillum
           seropedicae SmR1]
          Length = 280

 Score =  397 bits (1021), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 206/283 (72%), Positives = 234/283 (82%), Gaps = 4/283 (1%)

Query: 9   TTLSAIFFYPIKSCGALSLSRAEISPLGLALDRHWMLVDRQGQFLTQRTHPAMACITPAF 68
           + LSAI  YPIKSC  LSL+   I PLGLALDRHWMLVDRQG+FLTQR HP MACITPAF
Sbjct: 2   SILSAIHLYPIKSCAGLSLTHTPIGPLGLALDRHWMLVDRQGRFLTQRQHPEMACITPAF 61

Query: 69  EGDALVLRAPGMPALQLAAAGQDGATLAVKVWDSRVEALDQGEQAREWFSAYLQDDARLV 128
           EG+ LVLRAPGMPAL L+  G+DG  LAV+VW+S ++ALDQG+ A +W S YL +  RLV
Sbjct: 62  EGERLVLRAPGMPALSLSMQGEDGEALAVQVWNSHLDALDQGQTAAQWCSDYLGEAVRLV 121

Query: 129 RFNPAVKRACSTRWTGEHRATTQFSDGYPLLVIGQASLDDLNARLTAKGAPALPMDRFRP 188
           RFNPA  R CSTRWT   +A TQFSDGYPLLVIGQASL+DLNARLTAKGAPAL M+RFRP
Sbjct: 122 RFNPAASRPCSTRWTEGRQAYTQFSDGYPLLVIGQASLEDLNARLTAKGAPALGMERFRP 181

Query: 189 NLVIAGWEAYEEDFIDTVRLGSEDRPVQLKLVKPCARCPIPGIDQHSGQRDPQWPDEPMD 248
           NLVI+G +AY+ED I T+ LG    PV+L+LVKPCARCPIPGIDQ +G RD +WPDEP+D
Sbjct: 182 NLVISGLDAYDEDHISTLTLG----PVELRLVKPCARCPIPGIDQRTGLRDARWPDEPLD 237

Query: 249 TLATYRANARVNGGLTFGQNAIVIGGEGGVIEVGQACEWELNF 291
           TLA YRA+ RV+GGLTFGQNAIV GGEGGVIEVGQA +WE NF
Sbjct: 238 TLAGYRADPRVDGGLTFGQNAIVTGGEGGVIEVGQAVQWEWNF 280


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 878,078
Number of extensions: 35279
Number of successful extensions: 102
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 207
Effective length of database: 1,222,130
Effective search space: 252980910
Effective search space used: 252980910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)