BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0369.p
         (498 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313182|ref|YP_003777274.1| anthranilate synthase component...  1000   0.0  
gi|300310855|ref|YP_003774947.1| para-aminobenzoate synthetase c...   132   5e-32

>gi|300313182|ref|YP_003777274.1| anthranilate synthase component I
           protein [Herbaspirillum seropedicae SmR1]
          Length = 498

 Score = 1000 bits (2585), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/498 (98%), Positives = 496/498 (99%)

Query: 1   MTELEFKSLAAEGYNRIPLIAEAFADLETPLTLYLKLAQSHNTGKNTFLLESVVGGERFG 60
           MTELEFKSLA EGYNRIPLIAEAFADLETPLTLYLKLAQSH+TGKNTFLLESVVGGERFG
Sbjct: 1   MTELEFKSLATEGYNRIPLIAEAFADLETPLTLYLKLAQSHHTGKNTFLLESVVGGERFG 60

Query: 61  RYSFIGLPASTKIRCSGQQIEVLKNDEVIETAEGNALEFIAEYQSRFKVAIRPGMPRFCG 120
           RYSFIGLPASTKIRCSG+QIEVLKND VIETAEGNALEFIA+YQSRFKVAIRPGMPRFCG
Sbjct: 61  RYSFIGLPASTKIRCSGKQIEVLKNDVVIETAEGNALEFIAQYQSRFKVAIRPGMPRFCG 120

Query: 121 GLAGYFGYDAVRYIEKRLENSAPQDTLGLPDIQLLLTEELAVIDNLSGKLYLIVYADPTQ 180
           GLAGYFGYDAVRYIEKRLE+SAP+DTLGLPDIQLLLTEELAVIDNLSGKLYLIVYADPTQ
Sbjct: 121 GLAGYFGYDAVRYIEKRLEDSAPKDTLGLPDIQLLLTEELAVIDNLSGKLYLIVYADPTQ 180

Query: 181 PEAFSRGRQRLRDLRAMLRRPADAPVTTGSVRTETIREFPKDEYLKAVARAKEYVMAGDL 240
           PEAFSRGRQRLRDLRAMLRRPADAPVTTGSVRTETIREFPKDEYLKAVARAKEYVMAGDL
Sbjct: 181 PEAFSRGRQRLRDLRAMLRRPADAPVTTGSVRTETIREFPKDEYLKAVARAKEYVMAGDL 240

Query: 241 MQVQIGQRLRKSYVDSPLMLYRALRSLNPSPYMYFYNFGDMQIVGASPEILVRNESIGEG 300
           MQVQIGQRL+KSYVDSPLMLYRALRSLNPSPYMYFYNFGDMQIVGASPEILVRNESIGEG
Sbjct: 241 MQVQIGQRLKKSYVDSPLMLYRALRSLNPSPYMYFYNFGDMQIVGASPEILVRNESIGEG 300

Query: 301 QKKITIRPLAGTRPRGSTIERDEQLARELLADPKEIAEHVMLIDLARNDIGRIATTGSVK 360
           QKKITIRPLAGTRPRGSTIERDEQLARELLADPKEIAEHVMLIDLARNDIGRIATTGSVK
Sbjct: 301 QKKITIRPLAGTRPRGSTIERDEQLARELLADPKEIAEHVMLIDLARNDIGRIATTGSVK 360

Query: 361 VTDQMVIEKYSHVQHIVSNVEGILKPGMSNLDVLKATFPAGTLSGAPKVRAMEIIDELEP 420
           VTDQMVIEKYSHVQHIVSNVEGILKPGMSNLDVLKATFPAGTLSGAPKVRAMEIIDELEP
Sbjct: 361 VTDQMVIEKYSHVQHIVSNVEGILKPGMSNLDVLKATFPAGTLSGAPKVRAMEIIDELEP 420

Query: 421 TKRGIYGGACGYLSFGGEMDVAIAIRTGVIKDGTLYVQAAAGIVADSVPEMEWEETENKA 480
           TKRGIYGGACGYLSFGGEMDVAIAIRTGVIKDGTLYVQAAAGIVADSVPEMEWEETENKA
Sbjct: 421 TKRGIYGGACGYLSFGGEMDVAIAIRTGVIKDGTLYVQAAAGIVADSVPEMEWEETENKA 480

Query: 481 RAVLRAAEQVQDGLDGEI 498
           RAVLRAAEQVQDGLDGEI
Sbjct: 481 RAVLRAAEQVQDGLDGEI 498


>gi|300310855|ref|YP_003774947.1| para-aminobenzoate synthetase
           component I protein [Herbaspirillum seropedicae SmR1]
          Length = 660

 Score =  132 bits (333), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 92/276 (33%), Positives = 139/276 (50%), Gaps = 25/276 (9%)

Query: 224 YLKAVARAKEYVMAGDLMQVQIGQRLRKSYVDSPLMLYRALRSLNPSPYMYFYN--FGDM 281
           +  A+AR ++Y+ AGD  QV    RL        + LYR LR+  P PY        G M
Sbjct: 174 FSAAIARIRDYIAAGDTYQVNYTYRLHGDVHGDAIGLYRRLRARQPVPYGALVRDELGGM 233

Query: 282 QIVGASPEILVRNESIGEGQKKITIRPLAGTR----PRGSTIER-DEQLARELLADPKEI 336
            ++  SPE+ V ++     Q  +  +P+ GT     P     E  + Q A  L AD K  
Sbjct: 234 -VLSCSPELFVSHQ-----QGVLKAKPMKGTARALPPEQEGAETVNAQRALALAADEKNR 287

Query: 337 AEHVMLIDLARNDIGRIATTGSVKVTDQMVIEKYSHVQHIVSNVEGILKPGMSNLDVLKA 396
           AE++M++DL RND+GR+A  GSV+V     + +Y  V  + S +   L+   +  D + A
Sbjct: 288 AENLMIVDLLRNDLGRVAVPGSVQVPHLFDVRRYGQVLQMTSTIRARLREHATLADTINA 347

Query: 397 TFPAGTLSGAPKVRAMEIIDELEPTKRGIYGGACGYLSFG-------GEMDVAIAIRTGV 449
            +P G+++GAPK R MEII ELE   RG+Y GA G+           G+  +++ IRT  
Sbjct: 348 LYPCGSITGAPKRRTMEIIHELESEPRGLYTGAIGWFDAPRPGGPAIGDFCLSVPIRTLE 407

Query: 450 IKDGTLYVQAA-----AGIVADSVPEMEWEETENKA 480
           ++     ++ A     AGIV DS    E+ E + K+
Sbjct: 408 LQAPHAGLRKAVMGVGAGIVHDSQAAAEFAECQLKS 443


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.136    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,570,275
Number of extensions: 69755
Number of successful extensions: 187
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 2
Length of query: 498
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 409
Effective length of database: 1,198,455
Effective search space: 490168095
Effective search space used: 490168095
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)