BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0368.p
         (191 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313183|ref|YP_003777275.1| anthranilate synthase glutamine...   391   e-110
gi|300310710|ref|YP_003774802.1| carbamoyl-phosphate synthase sm...    59   2e-10

>gi|300313183|ref|YP_003777275.1| anthranilate synthase glutamine
           amido-transferase [Herbaspirillum seropedicae SmR1]
          Length = 191

 Score =  391 bits (1004), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 187/191 (97%), Positives = 191/191 (100%)

Query: 1   MLLMIDNYDSFTYNLVQYFGELGEEVLTIRNDEITLDDIKKLNPERICLSPGPCSPKEAG 60
           MLLMIDNYDSFTYNLVQYFGELGEEVLTIRNDEITLDDI+KLNPERICLSPGPCSPKEAG
Sbjct: 1   MLLMIDNYDSFTYNLVQYFGELGEEVLTIRNDEITLDDIRKLNPERICLSPGPCSPKEAG 60

Query: 61  ICVDLLKEFSGKLPILGVCLGHQAIGEAFGGNIIRAKQVMHGKTSKIAHTGVGVFKDLPT 120
           ICVDLLKEFSGKLPILGVCLGHQAIGEAFGGNIIRAKQVMHGKTSKIAHTGVGVF+DLP+
Sbjct: 61  ICVDLLKEFSGKLPILGVCLGHQAIGEAFGGNIIRAKQVMHGKTSKIAHTGVGVFQDLPS 120

Query: 121 PYTVIRYHSLAIERATLPDCLEVTAWTDDGEIMGVRHKEFDLQGVQFHPESILSEHGHAL 180
           PYTVIRYHSLAIERATLPDCLEVTAWTDDGEIMGVRHKEFDLQGVQFHPESILSEHGHAL
Sbjct: 121 PYTVIRYHSLAIERATLPDCLEVTAWTDDGEIMGVRHKEFDLQGVQFHPESILSEHGHAL 180

Query: 181 LKNFLTGSAHG 191
           LKNFL+GSAHG
Sbjct: 181 LKNFLSGSAHG 191


>gi|300310710|ref|YP_003774802.1| carbamoyl-phosphate synthase small
           subunit [Herbaspirillum seropedicae SmR1]
          Length = 387

 Score = 58.9 bits (141), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 79/173 (45%), Gaps = 13/173 (7%)

Query: 13  YNLVQYFGELGEEVLTIRNDEITLDDIKKLNPERICLSPGPCSPKEAGICVDLLKEFSGK 72
           YN+++   E G +V T+   + T  +   LNP+ I LS GP  P+     +   KE   +
Sbjct: 210 YNILRMLAERGCKV-TVLPAQATAAEALALNPDGIFLSNGPGDPEPCDYAIAASKELIER 268

Query: 73  -LPILGVCLGHQAIGEAFGGNIIRAKQVMHGKTSKIAHTGVGVFKDLPTPYTVI--RYHS 129
            +P  G+CLGHQ +  A G   ++ K   HG    +        +DL +   +I  + H 
Sbjct: 269 GIPTFGICLGHQIMALASGAKTLKMKFGHHGANHPV--------QDLDSKQVMITSQNHG 320

Query: 130 LAIERATLPDCLEVTAWT-DDGEIMGVRHKEFDLQGVQFHPESILSEHGHALL 181
            A+++ATLP    VT  +  DG + G    +      Q HPE+    H  A L
Sbjct: 321 FAVDQATLPANCRVTHVSLFDGSLQGFERTDKPAFCFQGHPEASPGPHDIAPL 373


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.141    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 631,069
Number of extensions: 26167
Number of successful extensions: 65
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 2
Length of query: 191
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 111
Effective length of database: 1,241,070
Effective search space: 137758770
Effective search space used: 137758770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)