BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0360.p
         (204 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313190|ref|YP_003777282.1| hypothetical protein Hsero_3901...   374   e-105

>gi|300313190|ref|YP_003777282.1| hypothetical protein Hsero_3901
           [Herbaspirillum seropedicae SmR1]
          Length = 202

 Score =  374 bits (961), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/204 (92%), Positives = 195/204 (95%), Gaps = 2/204 (0%)

Query: 1   MSVLPDPSTLVSGLDPMKPAAAVINHLLAQEPWARDTLMAHAGKVACIDTGVMQLRLKVT 60
           MSVLPDP+TL   LDPMKPAAA INHLLAQEPWAR+TL+AHAGKVACIDTGVMQLRLKV 
Sbjct: 1   MSVLPDPATL--ALDPMKPAAAAINHLLAQEPWARNTLIAHAGKVACIDTGVMQLRLKVA 58

Query: 61  GDGYLQEVPAYALANVTIRLKLSDLPLIAANRERAVSYVKLEGDADFANAISQLSQKLRW 120
           GDGYLQ+VPA A ANVTIR+KLSDLPLIAANRERAVSYVKLEGDADFANAISQLSQ LRW
Sbjct: 59  GDGYLQDVPADAPANVTIRIKLSDLPLIAANRERAVSYVKLEGDADFANAISQLSQTLRW 118

Query: 121 DAEDDLSRVVGDVAATRIVSGARGLFEAARTTQRKLTENLAEYFLEEQPMLIRPRQLQDF 180
           DAEDDLSRVVGDVAATRIVSGARGLFEAAR+T RKLT+NLAEYFLEEQPMLIRPRQLQDF
Sbjct: 119 DAEDDLSRVVGDVAATRIVSGARGLFEAARSTGRKLTDNLAEYFLEEQPMLIRPRQLQDF 178

Query: 181 SADVVRLRDDLERLSKRIEKLERR 204
           SADVVRLRDDLERLSKRIEKLERR
Sbjct: 179 SADVVRLRDDLERLSKRIEKLERR 202


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 601,916
Number of extensions: 23515
Number of successful extensions: 69
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 123
Effective length of database: 1,236,335
Effective search space: 152069205
Effective search space used: 152069205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)