BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0346.p
         (501 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310446|ref|YP_003774538.1| sulfite reductase, flavoprotein...   354   8e-99

>gi|300310446|ref|YP_003774538.1| sulfite reductase, flavoprotein
           component [Herbaspirillum seropedicae SmR1]
          Length = 850

 Score =  354 bits (909), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 226/517 (43%), Positives = 292/517 (56%), Gaps = 29/517 (5%)

Query: 6   LMAALVALTYLVFCV---MTFLRHRRAQQLQLAQW---GTVQATGPQTVLVVFASQTGTA 59
           ++ A+ +L   +F +   M +L  RR +    A+    G  Q      +LV +ASQTG A
Sbjct: 342 IIMAIASLMMPLFGITGWMLYLDRRRKKAALRAERAALGEPQQQAGGQLLVAYASQTGQA 401

Query: 60  EQLAWQTAQSLRSGGLVVRVLPAGQLTDADLQATRLALFVASTTGEGDAPDDASALARQL 119
           E++A  TA  LR  G+ V +    Q T   L+     L +AST GEGDAPD A    R+L
Sbjct: 402 ERIALHTAARLRRSGVAVTLQALAQTTAETLRHHPRLLLIASTFGEGDAPDSARGFERRL 461

Query: 120 GSSDSTALPDLRFGVLALGDRSYQQYCAFGHALHAWLCRRHAQPLFDAIEVDNGDEGALR 179
             +   +L  L + VLALGDR Y  +C FGH L   L +  A+P+F  +EVD  D  ALR
Sbjct: 462 RQAAGQSLAHLHYAVLALGDRHYTSFCGFGHTLDHGLRQCGAKPMFPLVEVDRMDAAALR 521

Query: 180 HWQHQL---GVLSGHSDEADWSAPAYGRWRLAGRRVLNPGSAGEPVFHLSLTPLDL--PS 234
            W+ +L   G+ +  SD    S+P +  W L  R  LN GS GEP+FHL L   D   P+
Sbjct: 522 KWESELASHGLDAAVSDLLPTSSPTWPSWVLVERHHLNAGSQGEPLFHLVLQSADSSQPA 581

Query: 235 PQWQAGDIAEIGPHNSGAAVNAFLQAIGRQDD----------SLRAALATRLLPHEADQL 284
           P WQAG + E+ P ++   V   LQ +G              SL  ALA  +LP +A   
Sbjct: 582 PAWQAGALLEVMPRHAPDRVALVLQRLGLDGATEVHCRGMRCSLADALACSVLPMQAAAD 641

Query: 285 AALRSLPDEELLAALPALPHRAYSIASLPADGALELMVRLMHLPDGRAGLGSGWLGLHAQ 344
           A       + L   L  L  R+YS+AS   DG ++L+VR     DG  GL SGWL  +A 
Sbjct: 642 A-------QTLAQQLQPLTARSYSVASAMQDGTVQLLVRQQRHEDG-LGLASGWLTEYAP 693

Query: 345 PGQEIALRVRSNRSFHGPGDDRPLILIGNGTGLAGLRAHLRERVAAGQRRNWLLFGERSR 404
            G  +  R+  N  F     D P I IGNG+G+AGLR HLR+R+ AG  RNWLLFGER+ 
Sbjct: 694 LGARLQARLVDNAGFAPVSADTPAIFIGNGSGMAGLRGHLRQRIHAGGTRNWLLFGERNE 753

Query: 405 QHDFFHQQELQEWQAQGWLQRLDLAFSRDQAERVYVQDKLRAAADVLRQWVEEGASLYVC 464
           ++DF +++ELQ W  QG L RLDLAFSRDQ  R+YVQD+LR AA  LR W+++GA LYVC
Sbjct: 754 RYDFLYREELQAWLQQGQLARLDLAFSRDQEARIYVQDRLREAAGELRHWLDQGAVLYVC 813

Query: 465 GSLQGMAGGVALALQEILGEDALQALAEQGRYRRDVY 501
           GSL GMA GV   L  +LGE  LQ L EQ RYRRDVY
Sbjct: 814 GSLDGMAAGVDAVLTSLLGETGLQDLIEQNRYRRDVY 850


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,742,688
Number of extensions: 83193
Number of successful extensions: 292
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 288
Number of HSP's successfully gapped: 2
Length of query: 501
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 412
Effective length of database: 1,198,455
Effective search space: 493763460
Effective search space used: 493763460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)