BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0341.p
         (963 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309775|ref|YP_003773867.1| ATP-dependent DNA helicase [Her...    67   7e-12
gi|300313605|ref|YP_003777697.1| ATP-dependent DNA helicase rep ...    66   1e-11

>gi|300309775|ref|YP_003773867.1| ATP-dependent DNA helicase
           [Herbaspirillum seropedicae SmR1]
          Length = 759

 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 74/139 (53%), Gaps = 12/139 (8%)

Query: 578 EIWKAWETELRSSQSIDFEDMLNQATDLIESGK-----WKSPYGLVMVDEFQDAS---YA 629
           E+++ ++ + +    +DF ++L +  +L+   +     ++S +  ++VDEFQD +   Y 
Sbjct: 169 ELYELYDQQCQREGVVDFAELLLRTYELLSRNQPLREHYQSRFRHILVDEFQDTNDLQYK 228

Query: 630 RAKLLAGLVKESGKHLFAVGDDWQSINRFAGADISVMTNFQDGFGEHVTLKLEKTFRCVR 689
             KL+AG        +FAVGDD QSI  F GA++  M  F+  F     +KLE+ +R   
Sbjct: 229 WLKLMAG----QHNAVFAVGDDDQSIYAFRGANVGNMQAFEQEFHVQNLIKLEQNYRSHG 284

Query: 690 SICDVSSAFVMKNPKQLRK 708
            I D ++  +  N K+L K
Sbjct: 285 HILDTANELIANNSKRLGK 303


>gi|300313605|ref|YP_003777697.1| ATP-dependent DNA helicase rep
           [Herbaspirillum seropedicae SmR1]
          Length = 690

 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 74/147 (50%), Gaps = 7/147 (4%)

Query: 579 IWKAWETELRSSQSIDFEDMLNQATDLIESG-----KWKSPYGLVMVDEFQDASYARAKL 633
           I++++   L++ Q++DF+D++    +L  S      +W+     +++DE+QD +  + +L
Sbjct: 170 IYRSYVATLKAYQAVDFDDLIRLPVELFRSNEEVRDRWQRKLRYLLIDEYQDTNTCQYEL 229

Query: 634 LAGLVKESGKH--LFAVGDDWQSINRFAGADISVMTNFQDGFGEHVTLKLEKTFRCVRSI 691
           +  LV   GK     AVGDD Q+I  + GA I  +      F     +KLE+ +R    I
Sbjct: 230 VKLLVTGIGKKPMFTAVGDDDQAIYAWRGATIENLKLLGVDFPNLHLIKLEQNYRSSTRI 289

Query: 692 CDVSSAFVMKNPKQLRKLVTSIHDSAD 718
              ++A +  NPK   K + S H   D
Sbjct: 290 LQAANAVISNNPKLFDKTLWSEHGLGD 316


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,934,025
Number of extensions: 120255
Number of successful extensions: 282
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 283
Number of HSP's successfully gapped: 2
Length of query: 963
Length of database: 1,619,870
Length adjustment: 94
Effective length of query: 869
Effective length of database: 1,174,780
Effective search space: 1020883820
Effective search space used: 1020883820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 135 (56.6 bits)