BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0338.p
         (268 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309941|ref|YP_003774033.1| dihydrodipicolinate reductase [...   495   e-141

>gi|300309941|ref|YP_003774033.1| dihydrodipicolinate reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 268

 Score =  495 bits (1275), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 245/268 (91%), Positives = 258/268 (96%)

Query: 1   MTALNIAVTGASGRMGRMLIEAILNAEGLHLSGALDTPASPAIGTDAGLFLGKTTGVIIE 60
           MT LNIAV GASGRMGRMLIEAILNA+ L L+GALDTP SP+IGTDAGLFLGK TGV+IE
Sbjct: 1   MTVLNIAVAGASGRMGRMLIEAILNADDLQLAGALDTPTSPSIGTDAGLFLGKATGVLIE 60

Query: 61  SELARGLAGADVLIDFTRPEGTLKHLEYCAAHGVKVVIGTTGFEAEGKAAIAEFAKRTAV 120
           S+LARGLA ADVLIDFTRPEGTLKHLEYCAAHGVKVVIGTTGFE EGKAAIA +A++TA+
Sbjct: 61  SDLARGLAKADVLIDFTRPEGTLKHLEYCAAHGVKVVIGTTGFEPEGKAAIAAYAEKTAI 120

Query: 121 MAAPNMSVGVNVTLKLLELAAKNFSHGYDIEIIEAHHRHKVDAPSGTALKMGEVIADALG 180
           MAAPNMSVGVNVT+KLLE+AAKNFSHGYDIEIIEAHHR KVDAPSGTALKMGEVIADALG
Sbjct: 121 MAAPNMSVGVNVTMKLLEMAAKNFSHGYDIEIIEAHHRFKVDAPSGTALKMGEVIADALG 180

Query: 181 KKLDDVAVYAREGVTGERDPSSIGFATVRGGDIIGDHTVLFAGIGERIEISHKSSSRVSY 240
           KKLDDVAVYAREGVTGERDPSSIGFATVRGGDIIGDHTVLFAGIGERIEISHKSSSRVSY
Sbjct: 181 KKLDDVAVYAREGVTGERDPSSIGFATVRGGDIIGDHTVLFAGIGERIEISHKSSSRVSY 240

Query: 241 AMGSLRAARFLADKDTGLYDMQDVLGFK 268
           AMGSLRAAR+LADK+TGLYDMQDVLGFK
Sbjct: 241 AMGSLRAARYLADKETGLYDMQDVLGFK 268


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 873,106
Number of extensions: 39471
Number of successful extensions: 138
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 184
Effective length of database: 1,222,130
Effective search space: 224871920
Effective search space used: 224871920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)