BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0334.p
         (216 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311044|ref|YP_003775136.1| proline/glycine betaine ABC tra...   384   e-108
gi|300311042|ref|YP_003775134.1| proline/glycine betaine ABC tra...   109   2e-25
gi|300309803|ref|YP_003773895.1| nitrate/sulfonate/bicarbonate A...    59   3e-10

>gi|300311044|ref|YP_003775136.1| proline/glycine betaine ABC
           transporters permease [Herbaspirillum seropedicae SmR1]
          Length = 216

 Score =  384 bits (986), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/216 (97%), Positives = 215/216 (99%)

Query: 1   MNIFQYLQSDWRNILDLTLQHLELVGIAVSLAIAIGVPLGILIVRVRWLAGPLMGLATIV 60
           MNIFQYLQSDW NIL+LTLQHL+LVGIAVSLAIAIGVPLGILIVRVRWLAGPLMGLATIV
Sbjct: 1   MNIFQYLQSDWPNILELTLQHLKLVGIAVSLAIAIGVPLGILIVRVRWLAGPLMGLATIV 60

Query: 61  LTLPSIALFGLMIPVFSQFGAGIGPLPAITAVFLYSLLPIMRNTYLALENIEAGIKEAGI 120
           LTLPSIALFGLMIP+FS+FGAGIGPLPAITAVFLYSLLPIMRNTYLALENIEAGIKEAGI
Sbjct: 61  LTLPSIALFGLMIPLFSKFGAGIGPLPAITAVFLYSLLPIMRNTYLALENIEAGIKEAGI 120

Query: 121 GIGMTFWQRLRMVDLPLAVPVILGGVRTAVVMNIGVMAIAAVIGAGGLGVLILHAISQSN 180
           GIGMTFWQRLRMVDLPLAVPVILGGVRTAVVMNIGVMAIAA+IGAGGLGVLILHAISQSN
Sbjct: 121 GIGMTFWQRLRMVDLPLAVPVILGGVRTAVVMNIGVMAIAAIIGAGGLGVLILHAISQSN 180

Query: 181 MQKLVVGAVMISVLAIIADTLLQRLQKILTPKGVQK 216
           MQKLVVGAVMISVLAIIADTLLQRLQKILTPKGVQK
Sbjct: 181 MQKLVVGAVMISVLAIIADTLLQRLQKILTPKGVQK 216


>gi|300311042|ref|YP_003775134.1| proline/glycine betaine ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 237

 Score =  109 bits (273), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/181 (41%), Positives = 109/181 (60%), Gaps = 10/181 (5%)

Query: 2   NIFQYLQSDWRNILDLTLQHLELVGIAVSLAIAIGVPLGILIVR--VRWLAGPLMGLATI 59
           ++ Q  + D   ++  T +HLELV  ++ LA+A G+P GI + R   +  A   + +  I
Sbjct: 28  DVIQKYRGD---LIYYTGKHLELVFTSMLLALATGIPAGIALSRPGAQRSAEKFIQIFNI 84

Query: 60  VLTLPSIALFGLMIPVFSQFGAGIGPLPAITAVFLYSLLPIMRNTYLALENIEAGIKEAG 119
             T+PSIA+  L +  F     GIG  P I A++L SLLPI+RNTY  L+N+ A +KEA 
Sbjct: 85  GNTIPSIAVLALALAFF-----GIGNGPTILALWLASLLPIVRNTYEGLKNVPAAMKEAA 139

Query: 120 IGIGMTFWQRLRMVDLPLAVPVILGGVRTAVVMNIGVMAIAAVIGAGGLGVLILHAISQS 179
            GIGM   Q L  V+LP A+P+I+GGVRTA+ +N+G   ++ +IG   LG LI   I  +
Sbjct: 140 RGIGMKPHQILLRVELPNALPIIVGGVRTALAINVGTAPLSMLIGGESLGGLIFPGIYLN 199

Query: 180 N 180
           N
Sbjct: 200 N 200


>gi|300309803|ref|YP_003773895.1| nitrate/sulfonate/bicarbonate ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 267

 Score = 59.3 bits (142), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 87/181 (48%), Gaps = 6/181 (3%)

Query: 3   IFQYLQSDWRNILDLTLQHLELVGIAVSLAIAIGVPLGILIVRVRWLAGPLMGLATIVLT 62
           I + L +DW  ++   L  L++  +A +LA+ +GV +  + V+ R++   L   A I+  
Sbjct: 51  IVKTLAADWSMLMASLLVTLKITFLAFALAVVLGVAIAFVFVQSRFIEISLFPYAIILQV 110

Query: 63  LPSIALFGLMIPVFSQFGAGIGPLPAITAVFLYSLLPIMRNTYLALENIEAGIKEAGIGI 122
            P +A+  L+I       A +     I A+F     PI+ NT L L ++  G+       
Sbjct: 111 TPIVAIAPLIIIWVKDTTAALTVCATIMALF-----PIISNTTLGLRSVNPGLLNLFRLN 165

Query: 123 GMTFWQRLRMVDLPLAVPVILGGVRTAVVMN-IGVMAIAAVIGAGGLGVLILHAISQSNM 181
             T WQ LR + +P A+P   GG+R +  +  IG +    V G GG G  + + I Q+  
Sbjct: 166 KATRWQTLRRLRIPSALPYFFGGLRISSGLALIGAVVAEFVAGTGGTGSGLAYQILQAGF 225

Query: 182 Q 182
           Q
Sbjct: 226 Q 226


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.145    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 545,726
Number of extensions: 19925
Number of successful extensions: 169
Number of sequences better than 1.0e-08: 11
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 11
Length of query: 216
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 135
Effective length of database: 1,236,335
Effective search space: 166905225
Effective search space used: 166905225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 128 (53.9 bits)