BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0332.p (88 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309625|ref|YP_003773717.1| hypothetical protein Hsero_0283... 106 3e-25 gi|300309375|ref|YP_003773467.1| hypothetical protein Hsero_0029... 92 1e-20 gi|300313609|ref|YP_003777701.1| hypothetical protein Hsero_4324... 81 2e-17 gi|300310277|ref|YP_003774369.1| hypothetical protein Hsero_0944... 79 7e-17 gi|300310095|ref|YP_003774187.1| hypothetical protein Hsero_0760... 72 1e-14 >gi|300309625|ref|YP_003773717.1| hypothetical protein Hsero_0283 [Herbaspirillum seropedicae SmR1] Length = 87 Score = 106 bits (265), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 53/85 (62%), Positives = 65/85 (76%) Query: 1 MRGIIRLGDSTSHGGKVVTGQDKSIVMGRAVACVGDHCSCPISGHHDCVIVEGDPNVLID 60 M+G+IRL D TSHGGKVV+ + V G+AVA VGD CSCP+ GH CVIVEG P + ID Sbjct: 1 MKGVIRLEDPTSHGGKVVSADARVAVRGKAVARVGDRCSCPVQGHVGCVIVEGHPTIEID 60 Query: 61 GKAVAFEGHKTSCGASLISSMESSG 85 G AVAF+GH+ SCGA LIS++ +SG Sbjct: 61 GIAVAFDGHRISCGAVLISTLSNSG 85 >gi|300309375|ref|YP_003773467.1| hypothetical protein Hsero_0029 [Herbaspirillum seropedicae SmR1] Length = 88 Score = 91.7 bits (226), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 50/84 (59%), Positives = 58/84 (69%), Gaps = 1/84 (1%) Query: 1 MRGIIRLGDSTSHGGKVVTGQDKSI-VMGRAVACVGDHCSCPISGHHDCVIVEGDPNVLI 59 M IIRLGD+TSHGGKV V G VA VGD CSCP GH +C I EG P+ I Sbjct: 1 MPNIIRLGDATSHGGKVTQVSTTHFKVGGLPVARVGDACSCPQQGHDNCTIAEGHPHHKI 60 Query: 60 DGKAVAFEGHKTSCGASLISSMES 83 DG AVA+EGHKTSCGA+LI+S ++ Sbjct: 61 DGVAVAYEGHKTSCGATLIASTDN 84 >gi|300313609|ref|YP_003777701.1| hypothetical protein Hsero_4324 [Herbaspirillum seropedicae SmR1] Length = 88 Score = 80.9 bits (198), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 41/81 (50%), Positives = 53/81 (65%) Query: 4 IIRLGDSTSHGGKVVTGQDKSIVMGRAVACVGDHCSCPISGHHDCVIVEGDPNVLIDGKA 63 IIRLGDSTSHGGKV++ + G +A VGD SCP GH I+EG P LI + Sbjct: 5 IIRLGDSTSHGGKVISASPTHTLHGIGIARVGDLVSCPREGHGTTPIIEGAPTYLIGDRM 64 Query: 64 VAFEGHKTSCGASLISSMESS 84 VA +GH+ +CG SLISS+ ++ Sbjct: 65 VALQGHRAACGCSLISSLATA 85 >gi|300310277|ref|YP_003774369.1| hypothetical protein Hsero_0944 [Herbaspirillum seropedicae SmR1] Length = 88 Score = 79.0 bits (193), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 37/81 (45%), Positives = 53/81 (65%) Query: 4 IIRLGDSTSHGGKVVTGQDKSIVMGRAVACVGDHCSCPISGHHDCVIVEGDPNVLIDGKA 63 IIRLGD TSHGG+V+T ++ G VA VGD CP+ GH I+EG P+ IDG+ Sbjct: 5 IIRLGDPTSHGGRVITASTTHLIGGLGVARVGDKVMCPLPGHGVNAIIEGAPSFQIDGRN 64 Query: 64 VAFEGHKTSCGASLISSMESS 84 VA G + +CG +L+S++ ++ Sbjct: 65 VALHGQRAACGCTLVSTLATA 85 >gi|300310095|ref|YP_003774187.1| hypothetical protein Hsero_0760 [Herbaspirillum seropedicae SmR1] Length = 85 Score = 71.6 bits (174), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 2/81 (2%) Query: 4 IIRLGDSTSHGGKVVTGQDKSIVMGRAVACVGDHCSCPISGHHDCVIVEGDPNVLIDGKA 63 +I LGD TSHGG V+ ++V G+ VA VGD SCP H I GDP ++IDG Sbjct: 5 VIVLGDKTSHGGTVIQASGVTMVGGKQVARVGDKVSCP--RHGSTTIASGDPTMIIDGAP 62 Query: 64 VAFEGHKTSCGASLISSMESS 84 VA +G KT+CGA LI+S ++ Sbjct: 63 VARDGDKTACGAVLIASQATT 83 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.135 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 274,007 Number of extensions: 9506 Number of successful extensions: 37 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 30 Number of HSP's successfully gapped: 8 Length of query: 88 Length of database: 1,619,870 Length adjustment: 58 Effective length of query: 30 Effective length of database: 1,345,240 Effective search space: 40357200 Effective search space used: 40357200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 123 (52.0 bits)