BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0329.p
         (765 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309622|ref|YP_003773714.1| transmembrane protein [Herbaspi...   106   9e-24
gi|300310996|ref|YP_003775088.1| transmembrane protein [Herbaspi...    98   2e-21

>gi|300309622|ref|YP_003773714.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 711

 Score =  106 bits (264), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 163/394 (41%), Gaps = 82/394 (20%)

Query: 34  LPGIVIFIHGVNDPGAVYSFVEEGLCQGLNERLDRKDLKAGNYGAEYRRVKAKTKAEKQD 93
           LPG++I +HGVN  G  Y   E GLC+GLNERL R+  +    G    R+       +  
Sbjct: 36  LPGVIILVHGVNSDGEWYESTERGLCEGLNERLARRPEQMAYSGPTSGRLAPVQYTPELT 95

Query: 94  RDIISDP----DTYLYQRKETAGQTKSVFIPFYWGYRAQNDEIARFDSKGKSNTAEVKGG 149
            D    P    D ++      A    S  I F WGY+A   ++ +F      N  +  GG
Sbjct: 96  ADGYLAPQRSADNFI-----KAQPHYSPVIRFRWGYKASKKDVRQFGKNVWLNENDYWGG 150

Query: 150 VDDGQGFQTVRGQYQDIHGNRLDQHFGKAGGFFANATNNIPDMYGKGFSPD---WVTDRV 206
                                         G FAN  + I D++ +G +     W+T + 
Sbjct: 151 ------------------------------GPFANGCSTIADLWTEGLNDRLFLWLTAQH 180

Query: 207 TNNSLGGPSLYAASSPHRRYFILAATRLAHLISTIRSIDPSALANAHGMKPANETITIMG 266
            N  + G  +Y    PHR Y++ AA RLA LI +IR             + A+  IT+M 
Sbjct: 181 LN-PVAGRDVY--RCPHRAYYVHAALRLARLIKSIRD------------RQADCPITVMC 225

Query: 267 HSQGTILTLLAQAILKKDGKRCVDCVIMVDSPYSLYK---TSDCNQRGS----------- 312
           HSQG ++ + A  +  + G +  D  ++ + P SL     T + +QRGS           
Sbjct: 226 HSQGNMVGIAAAFLADRLGIQA-DNYLLCNPPLSLVPDNLTENWSQRGSSDSQGSLGRQT 284

Query: 313 --AKLQTLINIVNAITADPYNIEDLAELMIDHCNSRGRAGTKWSQNKGQRLDKSGKQWIT 370
             A+++TL N    + A          +  +  NS  + G  ++   G R  + G    T
Sbjct: 285 YRARVETLKNFFILLRARAACAHADKRIDREMANSAPKVGPAFTA-AGDR-QRHGLNGST 342

Query: 371 FDERDNRGKVYLYFCPEDTVVGLRSVRGIGTFGV 404
           F      G+V LY  P D V+   +V+GIG  G+
Sbjct: 343 F------GRVTLYCNPHDQVISATTVQGIGWRGM 370


>gi|300310996|ref|YP_003775088.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 715

 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 105/395 (26%), Positives = 161/395 (40%), Gaps = 84/395 (21%)

Query: 34  LPGIVIFIHGVNDPGAVYSFVEEGLCQGLNERLDRKDLKAGNYG-AEYRRVKAKTKAEKQ 92
           LPG++I +HGVN  G  Y   EEGLC+GLN+RL R+  +    G    R + AK   E  
Sbjct: 39  LPGVIILVHGVNSDGEWYDSTEEGLCEGLNDRLARQPEQMAFSGPTSGRLMAAKYTPELT 98

Query: 93  DRDIIS---DPDTYLYQRKETAGQTKSVFIPFYWGYRAQNDEIARFDSKGKSNTAEVKGG 149
               ++       +L  +        S  I F WGY+A   ++  +      N       
Sbjct: 99  SEGFLAPMRSASNFLAPQPHW-----SPVIRFRWGYKASKKDLRLYGPNVWLNE------ 147

Query: 150 VDDGQGFQTVRGQYQDIHGNRLDQHFGKAGGFFANATNNIPDMYGKGFSPD---WVTDRV 206
                         QD  G          GG FAN  + + D++ +G +     W+T + 
Sbjct: 148 --------------QDYWG----------GGPFANGCSAVADLWSEGLNDRLFLWLTAQH 183

Query: 207 TNNSLGGPSLYAASSPHRRYFILAATRLAHLISTIRSIDPSALANAHGMKPANETITIMG 266
            N  + G  +Y  + PHR Y++ AA RLA LI +IR             +  +  +T+M 
Sbjct: 184 LN-PVPGRDVY--TCPHRAYYVHAALRLARLIKSIRE------------RQQDCPVTVMC 228

Query: 267 HSQGTILTLLAQAILKKDGKRCVDCVIMVDSPYSLYK---TSDCNQRGS----------- 312
           HSQG ++ L A  +  + G +  D  ++ + P SL          QRGS           
Sbjct: 229 HSQGNMVGLAAAFLADRLGVQA-DSYLLCNPPLSLVPDNMMESWVQRGSRDARGAAGRQS 287

Query: 313 --AKLQTLINIVNAITADPYNIEDLAELMIDHCNSRGRAGTKW-SQNKGQRLDKSGKQWI 369
             A+ +TL N    +            +  +  N+  R G  + S +  QR   +G    
Sbjct: 288 SAARTETLKNFFTLLRQRAAAAHPDDRIDKEMANAAPRQGQPFTSADDRQRHGLNGN--- 344

Query: 370 TFDERDNRGKVYLYFCPEDTVVGLRSVRGIGTFGV 404
           TF      G+V LY  P D V+   +V+GIG  G+
Sbjct: 345 TF------GRVTLYCNPHDQVISASTVQGIGWRGM 373


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,544,694
Number of extensions: 113650
Number of successful extensions: 264
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 256
Number of HSP's successfully gapped: 4
Length of query: 765
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 672
Effective length of database: 1,179,515
Effective search space: 792634080
Effective search space used: 792634080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 134 (56.2 bits)