BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0327.p
         (108 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309592|ref|YP_003773684.1| VGR-related protein [Herbaspiri...    97   3e-22
gi|300309366|ref|YP_003773458.1| VGR-related protein [Herbaspiri...    66   6e-13

>gi|300309592|ref|YP_003773684.1| VGR-related protein
          [Herbaspirillum seropedicae SmR1]
          Length = 966

 Score = 97.1 bits (240), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 48/88 (54%), Positives = 62/88 (70%)

Query: 9  AFASSSLNQSNRAIQLHWGKAQSTLEQVLVVQRIDIREGLYTGIEGHLTCLSTRSDLPLK 68
          AFAS+ L+Q+ R I+L WG  +   EQ L++QR+DI+E L  G++  LTC+ST  DLPL 
Sbjct: 11 AFASAILSQNLRPIRLRWGPQEQRFEQSLLLQRVDIQETLLEGMQVQLTCVSTDPDLPLH 70

Query: 69 TFLGLPVAVRLVTDRGALHEICGLITDA 96
          T LG P+ V +VTDRG LH   GLITDA
Sbjct: 71 TLLGQPLGVEMVTDRGRLHHTNGLITDA 98


>gi|300309366|ref|YP_003773458.1| VGR-related protein
          [Herbaspirillum seropedicae SmR1]
          Length = 913

 Score = 66.2 bits (160), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 50/86 (58%)

Query: 11 ASSSLNQSNRAIQLHWGKAQSTLEQVLVVQRIDIREGLYTGIEGHLTCLSTRSDLPLKTF 70
          A S+  Q  RAI+L    +   L+  L+V  +  RE L   +E  L CL++R DL L+ F
Sbjct: 9  ALSTWTQKARAIRLRLPPSHQALQDALLVMHVTGRESLCGAMEYELLCLTSREDLALEDF 68

Query: 71 LGLPVAVRLVTDRGALHEICGLITDA 96
          + LPV ++LVTD G L  +CG I +A
Sbjct: 69 VALPVEIQLVTDLGLLRTVCGFIAEA 94


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 325,521
Number of extensions: 11844
Number of successful extensions: 37
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 2
Length of query: 108
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 36
Effective length of database: 1,278,950
Effective search space: 46042200
Effective search space used: 46042200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 124 (52.4 bits)