BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0314.p
         (281 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311057|ref|YP_003775149.1| hypothetical protein Hsero_1728...   523   e-150

>gi|300311057|ref|YP_003775149.1| hypothetical protein Hsero_1728
           [Herbaspirillum seropedicae SmR1]
          Length = 281

 Score =  523 bits (1346), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 254/281 (90%), Positives = 264/281 (93%)

Query: 1   LDHVSSPDEVFSFTHVRSAALSCLKEMHPAVKCSSVRALRAAWQAGQLALETDDLAAAES 60
           +DHVSSPDEVFSFT +RS ALSCLKE  PA KCS+VRALRAAWQ G+L LET+DLA  E 
Sbjct: 1   MDHVSSPDEVFSFTGLRSGALSCLKETRPAAKCSAVRALRAAWQQGRLPLETEDLAVTEP 60

Query: 61  GSGIPGRPARPELVSPLQVKHRSMGTPEGRAALIHALAHIEFNAINLALDAVWRFAGMPR 120
           GSGIPGRP RPELVSPLQVKHRSMGTPEGRAALIHALAHIEFNAINLALDAVWRFAGMPR
Sbjct: 61  GSGIPGRPERPELVSPLQVKHRSMGTPEGRAALIHALAHIEFNAINLALDAVWRFAGMPR 120

Query: 121 EFYDDWLQVADEEAYHFSLLADHLKTLGHDYGDFTAHNALWDMAESTKDDVLARIALVPR 180
           +FY DWLQVADEEAYHF LLADHL TLGH YGDFTAHNALWDMAESTK DVLARIALVPR
Sbjct: 121 DFYVDWLQVADEEAYHFRLLADHLSTLGHAYGDFTAHNALWDMAESTKGDVLARIALVPR 180

Query: 181 TLEARGLDAAPPVRAKLAQAGDLAAAEILDIIMRDEVGHVLIGNRWFNWLCEQRQLDPVT 240
           TLEARGLDAAPPVRAKLAQAGDLAAAEILDIIMRDEVGHVLIGNRWFNWLCEQRQLDPV 
Sbjct: 181 TLEARGLDAAPPVRAKLAQAGDLAAAEILDIIMRDEVGHVLIGNRWFNWLCEQRQLDPVA 240

Query: 241 TFAELCQRHRAPPLRGPFNLEARRAAGFSDEEMLMFSDVSR 281
           TFA+LCQRH+APPLRGPFNLEARRAAGFSDEEMLMF+D+SR
Sbjct: 241 TFAQLCQRHKAPPLRGPFNLEARRAAGFSDEEMLMFTDISR 281


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.134    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 860,632
Number of extensions: 33119
Number of successful extensions: 106
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 197
Effective length of database: 1,222,130
Effective search space: 240759610
Effective search space used: 240759610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)