BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0310.p
         (290 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311061|ref|YP_003775153.1| transmembrane protein [Herbaspi...   335   2e-93

>gi|300311061|ref|YP_003775153.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 292

 Score =  335 bits (860), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 200/261 (76%), Positives = 214/261 (81%), Gaps = 4/261 (1%)

Query: 1   MHKTTGTPLKASVRLSRIALALAVLAGGLSCAWTVAQNAPSTAAAPSATPATPAPAASPA 60
           M KTTGT +KA  RLSRIALALAVLAGGLSCAWTVAQNAP+  AAP+A  ATPA A +PA
Sbjct: 1   MRKTTGTSVKAPARLSRIALALAVLAGGLSCAWTVAQNAPAEPAAPTAAAATPAAAPAPA 60

Query: 61  ATAPVAGTPGTAAAPAAPAATHASKSAG-RSIARKPENKLAWANLSPAQHQALEPLTGEW 119
                + TP     P A A  H    +G +S ARK +N+LAW NLS AQ QALEPLT EW
Sbjct: 61  PAPATSATPAAPVTPPAAATAHPPAKSGVKSTARKSDNQLAWTNLSAAQRQALEPLTTEW 120

Query: 120 PRMSELQKEKWLEIGKRYTKMKPEEQQRLHERMRDWVKLTPAERSAARTNYARAKKLDAE 179
           PRMSELQKEKWLEIGKRY +MKPEEQQRLHERMRDWVKLTPAERSAARTNYARAKKLDAE
Sbjct: 121 PRMSELQKEKWLEIGKRYARMKPEEQQRLHERMRDWVKLTPAERSAARTNYARAKKLDAE 180

Query: 180 EKHEQWTKYQQLSEEQKKKLAESKLPKRVAKLPTSPSAAAPTIQLPTEALDRSLPVTPAQ 239
           EKHEQW KYQQLSEEQKKKL+E+KLPKRVAKLPTSPSAAAPTIQLP EALDR LPV PA 
Sbjct: 181 EKHEQWAKYQQLSEEQKKKLSEAKLPKRVAKLPTSPSAAAPTIQLPAEALDRPLPVVPA- 239

Query: 240 VPAPAVAP-APSQVPGSQATP 259
            P PA+AP AP+ VPGSQA P
Sbjct: 240 -PTPAIAPVAPALVPGSQAAP 259


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.308    0.119    0.343 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 538,976
Number of extensions: 17695
Number of successful extensions: 112
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 206
Effective length of database: 1,222,130
Effective search space: 251758780
Effective search space used: 251758780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 130 (54.7 bits)