BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0309.p
         (135 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311062|ref|YP_003775154.1| hypothetical protein Hsero_1733...   211   2e-56

>gi|300311062|ref|YP_003775154.1| hypothetical protein Hsero_1733
           [Herbaspirillum seropedicae SmR1]
          Length = 136

 Score =  211 bits (536), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 119/137 (86%), Positives = 124/137 (90%), Gaps = 3/137 (2%)

Query: 1   MNNKEMQFAYKVKLALDANLDNLSDDTLQSLSAARRVALARKKQAPIHKRVEQPALAGAF 60
           MNNKEMQFAYKVKLALDANLDNLSDDTLQSL+AARRVALARKKQ P+  RVEQP LAGAF
Sbjct: 1   MNNKEMQFAYKVKLALDANLDNLSDDTLQSLAAARRVALARKKQTPMTVRVEQPVLAGAF 60

Query: 61  G--GTMMSPEKPSWWSRLGVAAPLLVGIILFAGIYQHENAKRVSYLADIDAAVLSDELPL 118
           G  G M+SP K SW  RLGVAAPLL GIILFAG+YQHENAKRVSYLADIDAAVLSDELPL
Sbjct: 61  GSAGGMLSP-KASWLGRLGVAAPLLAGIILFAGLYQHENAKRVSYLADIDAAVLSDELPL 119

Query: 119 SAYLDHGFNAFLAEKGQ 135
           SAYLDHGFNA+LAEK Q
Sbjct: 120 SAYLDHGFNAYLAEKEQ 136


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 342,618
Number of extensions: 12850
Number of successful extensions: 48
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 1
Length of query: 135
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 59
Effective length of database: 1,260,010
Effective search space: 74340590
Effective search space used: 74340590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)