BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0298.p
         (236 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311072|ref|YP_003775164.1| hypothetical protein Hsero_1743...   339   1e-94

>gi|300311072|ref|YP_003775164.1| hypothetical protein Hsero_1743
           [Herbaspirillum seropedicae SmR1]
          Length = 238

 Score =  339 bits (870), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 180/224 (80%), Positives = 190/224 (84%)

Query: 13  ALAAGAETLAADILRSAPGQPVHTLVLHGAGQGDRQRQWPLRQALAARGSASAAIDFSGH 72
           ALA GAETLAAD+L       V TLVLHGAGQGDRQRQWPLRQALA RG ASAAIDFSGH
Sbjct: 14  ALAVGAETLAADLLHGPASATVQTLVLHGAGQGDRQRQWPLRQALALRGCASAAIDFSGH 73

Query: 73  GQSSALLHNSLSKRLDEAQAALDRLTVSPRTVVGVSMSGEIALRLACQPENRITHVVTLV 132
           GQSSA   NSL+KRL EAQAALD LTV+PRTVVGVSMSGEIALRLAC+PENRI HVVTLV
Sbjct: 74  GQSSARQPNSLAKRLAEAQAALDALTVAPRTVVGVSMSGEIALRLACRPENRIAHVVTLV 133

Query: 133 GALYDGAAFMLPFGPAFSAALRRPHSWRDAEVLQMIRAYRGRLTIIRASEDAVIPAEIAE 192
           GALYDGAAF LPFGPAFSAALRRP SWRDA VL +IR Y GRLT+IRASEDAVIPAE+AE
Sbjct: 134 GALYDGAAFELPFGPAFSAALRRPGSWRDATVLALIRRYPGRLTLIRASEDAVIPAEVAE 193

Query: 193 LIRQHASPASDCRIVDLPGMDHRVSERSAQDAALCAQLAALITD 236
           LIR HA  AS CRIVDLPG+DHRVSERS  DA L  +LA LI +
Sbjct: 194 LIRAHAVAASACRIVDLPGVDHRVSERSQHDALLRERLADLILE 237


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.132    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 646,890
Number of extensions: 24216
Number of successful extensions: 114
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 154
Effective length of database: 1,231,600
Effective search space: 189666400
Effective search space used: 189666400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)