BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0294.p (509 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311074|ref|YP_003775166.1| transcription regulator protein... 922 0.0 gi|300311016|ref|YP_003775108.1| MocR family transcription regul... 350 2e-97 gi|300311139|ref|YP_003775231.1| MocR family transcription regul... 162 8e-41 gi|300313928|ref|YP_003778020.1| GntR family transcription regul... 135 7e-33 gi|300310416|ref|YP_003774508.1| MocR family transcription regul... 133 4e-32 >gi|300311074|ref|YP_003775166.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 922 bits (2382), Expect = 0.0, Method: Compositional matrix adjust. Identities = 447/510 (87%), Positives = 477/510 (93%), Gaps = 3/510 (0%) Query: 1 MDTRLHLPDTT---PAAPPPATAPAALAATPDNGRQPLYRRLAEHYQGAIQSGTLVAGDR 57 MDT L + D + P T + L + P++GRQPLYRRLA+HYQ AIQ+GTLVAGDR Sbjct: 5 MDTSLLIADASGAAATPTAPTTPASLLPSAPESGRQPLYRRLADHYQSAIQAGTLVAGDR 64 Query: 58 MPSVRDLMRQHQVSLSTSLQTLRHMEEGGWLEARPRSGYFVRQPRRSAIRPVQEPKSLMA 117 MPSVRDLMRQHQVSLST+LQTLRHMEEGGWLEARPRSGYFVRQPRRSAIRPVQEPKSL+A Sbjct: 65 MPSVRDLMRQHQVSLSTALQTLRHMEEGGWLEARPRSGYFVRQPRRSAIRPVQEPKSLLA 124 Query: 118 IDPEQYAGIHEKVSKYIALRQSGAPRIDLSGMTCAPELYAVETLKQAAMRALRERPELLT 177 ID Q+ GIHE+VSKYIALRQ+GAP IDLSGMTCAP+LYAVETLKQAAMRALRERPELLT Sbjct: 125 IDAGQFVGIHERVSKYIALRQAGAPHIDLSGMTCAPQLYAVETLKQAAMRALRERPELLT 184 Query: 178 SAMPHNGNATFRQAVARRALHHGMRIDHEEVVVTHGCIEALNLALRAVAGPGDTIAVESP 237 SAMPHNGNATFRQAVARRAL+ GMRID EEVVVTHGCIEALNLA+RAVAGPGDTIAVESP Sbjct: 185 SAMPHNGNATFRQAVARRALNAGMRIDTEEVVVTHGCIEALNLAMRAVAGPGDTIAVESP 244 Query: 238 TYFGLLQALENLGMKALEIPTSPHTGISVEALELAVRTYGNIKGVVVVPNLQNPLGCIMP 297 TYFGLLQALENLGMKALEIPTSPHTGISVEALELAVRTYGNIK VVVVPNLQNPLGCIMP Sbjct: 245 TYFGLLQALENLGMKALEIPTSPHTGISVEALELAVRTYGNIKAVVVVPNLQNPLGCIMP 304 Query: 298 DEHKDKLVRLCEELRLPLIEDDAYTELADGNVPPSSLKSRDRSGNVIYCASLNKVLAPGM 357 ++HKD+LVRLC++L+LPLIEDDAYTELADG+V PSSLKSRDR+GNVIYCASLNKVLAPGM Sbjct: 305 EDHKDQLVRLCDQLKLPLIEDDAYTELADGSVTPSSLKSRDRNGNVIYCASLNKVLAPGM 364 Query: 358 RLGWMNGGRWHERVKMLKFTHTRANEEWTQVTAADFIASPAYDRHLRRLRQLLKEQRERM 417 RLGWMNGGRWHERVKMLKFTHTRANEEWTQVTAADFIASPAYDRHLRRLRQ+LK+QRERM Sbjct: 365 RLGWMNGGRWHERVKMLKFTHTRANEEWTQVTAADFIASPAYDRHLRRLRQMLKQQRERM 424 Query: 418 AESIAAYFPEGTRLNVPNGGVGLWVELPAQVCSQQLFERALLEGVGVSPGAIFSNSNRYG 477 AESIAAYFPEGTRLN+PNGGVGLWVELP QVCSQQLFERAL EGVGVSPGAIFSNS+RYG Sbjct: 425 AESIAAYFPEGTRLNLPNGGVGLWVELPVQVCSQQLFERALAEGVGVSPGAIFSNSSRYG 484 Query: 478 HFLRICCGHPFTRELDQALRRLGSIGHSLA 507 HF+RICCGHPF RELDQALRRLG + H LA Sbjct: 485 HFVRICCGHPFNRELDQALRRLGGLVHHLA 514 >gi|300311016|ref|YP_003775108.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 480 Score = 350 bits (898), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 193/484 (39%), Positives = 292/484 (60%), Gaps = 19/484 (3%) Query: 34 PLYRRLAEHYQGAIQSGTLVAGDRMPSVRDLMRQHQVSLSTSLQTLRHMEEGGWLEARPR 93 PLY++ A+ +I+ G L G+R+ SVR +QH+VS++T ++ +E G +E++P+ Sbjct: 5 PLYKQFADQLAASIRDGVLRPGERIASVRIASQQHKVSVTTVVRAYELLESRGIIESQPQ 64 Query: 94 SGYFVRQPRRSAIRPVQEPK-SLMAIDPEQYAGIHEK----VSKYI-----ALRQSGAPR 143 SGYFVR+ +P PK +L E + E VS+ + ++Q G Sbjct: 65 SGYFVRE------QPEAPPKPALRTTSREDHPAWQESTEVDVSRLVLATLKTIQQDGT-- 116 Query: 144 IDLSGMTCAPELYAVETLKQAAMRALRERPELLTSAMPHNGNATFRQAVARRALHHGMRI 203 + L P L+ L Q A R R + G+ + +ARR L +G+++ Sbjct: 117 VPLGSPYPNPALFPSHRLAQYAGRIARHASQSSVFDDLPPGHPELLRQIARRYLENGLKV 176 Query: 204 DHEEVVVTHGCIEALNLALRAVAGPGDTIAVESPTYFGLLQALENLGMKALEIPTSPHTG 263 D EE+V+T G EA+NL L+AVA PGDTIAVE+PT++ +L A+E LGM+ALEIPT P G Sbjct: 177 DPEEIVITVGATEAINLCLQAVARPGDTIAVETPTFYAMLHAIERLGMRALEIPTDPQRG 236 Query: 264 ISVEALELAVRTYGNIKGVVVVPNLQNPLGCIMPDEHKDKLVRLCEELRLPLIEDDAYTE 323 I V ALE ++T I +V+PN QNPLG MPD K++LVRL E+ ++P+IE+ Y+E Sbjct: 237 IDVGALEERMKTQA-IAACMVMPNFQNPLGFQMPDSEKERLVRLAEQHQMPVIENAVYSE 295 Query: 324 LADGNVPPSSLKSRDRSGNVIYCASLNKVLAPGMRLGWMNGGRWHERVKMLKFTHTRANE 383 L GN PSSLK+ DR G V++C+S +K L R+GW GR+ +V+ LKF +T A Sbjct: 296 LYYGNAHPSSLKNYDRDGLVLHCSSFSKSLTSAYRIGWAMPGRYRAQVEKLKFLNTLATP 355 Query: 384 EWTQVTAADFIASPAYDRHLRRLRQLLKEQRERMAESIAAYFPEGTRLNVPNGGVGLWVE 443 Q A+++ Y+RHLRR+R+ +QR+ M + +FP GT+++ P GG LWVE Sbjct: 356 TAPQRAIAEYLTQGGYERHLRRVRRAFAQQRDMMRHFVLRFFPAGTQVSEPQGGYVLWVE 415 Query: 444 LPAQVCSQQLFERALLEGVGVSPGAIFSNSNRYGHFLRICCGHPFTRELDQALRRLGSIG 503 LP V + +L+ R+L G+ V+PG IF+ +NRY HF+R+ + +++E +QAL+ +G + Sbjct: 416 LPQGVDAMELYRRSLALGITVAPGRIFAATNRYSHFIRLNYSYAWSKETEQALKLVGKLV 475 Query: 504 HSLA 507 LA Sbjct: 476 EELA 479 >gi|300311139|ref|YP_003775231.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 398 Score = 162 bits (409), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 112/362 (30%), Positives = 176/362 (48%), Gaps = 13/362 (3%) Query: 146 LSGMTCAPELYAVETLKQAAMRALRERPELLTSAMPHNGNATFRQAVARRALHHGMRIDH 205 +G +P + VE +K A R L ++ ++ P +G R+ +A +G +I Sbjct: 40 FAGGLPSPLTFPVEHMKTAFDRVLSQQGKMALQYGPTDGYLPLREWIAASLSTNGAQISA 99 Query: 206 EEVVVTHGCIEALNLALRAVAGPGDTIAVESPTYFGLLQALENLGMKALEIPTSPHTGIS 265 E+V++ G + L+L + + G + VE+P+Y G LQA G K +P S G+ Sbjct: 100 EQVLMVSGSQQGLDLLGKVLIDEGSKVLVETPSYLGALQAFALYGAKFESVP-SDEFGLQ 158 Query: 266 VEALELAVRTYGNIKGVVVVPNLQNPLGCIMPDEHKDKLVRLCEELRLPLIEDDAYTELA 325 E +E G + + +PN QNP G +P E + KLV C L LPLIEDD Y L+ Sbjct: 159 PETIEAIA---GGARMLYSLPNFQNPTGRTLPTERRFKLVETCARLGLPLIEDDPYGALS 215 Query: 326 DGNVPPSSLKSRDRSGNVIYCASLNKVLAPGMRLGWMNGGR----WHERVKMLKFTHTRA 381 N P + S + SG VIY S +KVL PG+RLG++ R E+ K HT Sbjct: 216 YQNAPLPKMLSMNPSG-VIYMGSFSKVLTPGIRLGYVVAPRPLILKMEQAKQATDLHT-- 272 Query: 382 NEEWTQVTAADFIASPAYDRHLRRLRQLLKEQRERMAESIAAYFPEGTRLNVPNGGVGLW 441 + TQ+ + I D+H+ +R+L +Q + M +++ YFP + P GG+ +W Sbjct: 273 -AQLTQMVVYEAIKDGFLDQHVPTIRKLYGDQCQAMLDALQQYFPASCSWSKPEGGMFIW 331 Query: 442 VELPAQVCSQQLFERAL-LEGVGVSPGAIFSNSNRYGHFLRICCGHPFTRELDQALRRLG 500 V LP + + L A+ E V PGA F + + LR+ ++ + RLG Sbjct: 332 VTLPEHIDAGALLNEAVEQEKVAFVPGAPFYANVAQKNTLRLSFVTVPPEQIRAGVERLG 391 Query: 501 SI 502 + Sbjct: 392 KL 393 >gi|300313928|ref|YP_003778020.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 472 Score = 135 bits (340), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 126/488 (25%), Positives = 214/488 (43%), Gaps = 24/488 (4%) Query: 17 PATAPAALAATPDNGRQPLYRRLAEHYQGAIQSGTLVAGDRMPSVRDLMRQHQVSLSTSL 76 PA AP L + L ++A G I++G L +G+R+PSVR + H + ST + Sbjct: 4 PARAPLQLDLKRKTSAR-LVEQVANGLAGLIETGELRSGERLPSVRQFAQHHDIGSSTVV 62 Query: 77 QTLRHMEEGGWLEARPRSGYFVRQPRRSAIRPVQEPKSLMAIDPEQYAGIHEKVSKYIAL 136 + + G L+AR +G+FV A R Q + + + PE S ++ Sbjct: 63 EAYEQLVARGMLQARRGAGFFV------AARAGQSGQHAVFVPPEPVID-----SAWLLS 111 Query: 137 RQSGAPRIDL-SGMTCAP-ELYAVETLKQAAMRALRERPELLTSAMPH-NGNATFRQAVA 193 R+ + +G P + E L QA R +R P H G A RQ + Sbjct: 112 EMFADERVPIKAGCGWLPGKWLNDEGLHQAERRIIRS-PGAQQVGYGHPYGYAPLRQLIT 170 Query: 194 RRALHHGMRIDHEEVVVTHGCIEALNLALRAVAGPGDTIAVESPTYFGLLQALENLGMKA 253 + H + + E+V+ THG +AL+L +R + PGDT+ ++ P Y L+ L G+ Sbjct: 171 QFLGHWSLELGIEQVLTTHGATQALDLVIRTMTQPGDTVLIDDPGYCNLIAMLRLAGLNV 230 Query: 254 LEIPTSPHTGISVEALELAVRTYGNIKGVVVVPNLQNPLGCIMPDEHKDKLVRLCEELRL 313 + +P +P G+ + LE RT+ + K LQNP G ++++ E Sbjct: 231 IGVPRTP-GGVDTDVLETLARTH-HPKMFFTTSVLQNPTGTSYTPACAMRVLQAAERHGF 288 Query: 314 PLIEDDAYTELADGNVPPSSLKSRDRSGNVIYCASLNKVLAPGMRLGWMNGGRWHER-VK 372 ++EDD + EL P L + D VIY S +K +AP +R+G++ R R + Sbjct: 289 WVVEDDIFRELGQATDP--MLAALDGLQRVIYVGSYSKTIAPSLRVGYIACQRELARQIV 346 Query: 373 MLKFTHTRANEEWTQVTAADFIASPAYDRHLRRLRQLLKEQRERMAESIAAYFPEGTRLN 432 K T N E + + + + RH++ L L + + ++ T Sbjct: 347 HTKMVLTLTNSEINERLVHNVLTEGHHRRHVQTLNATLLSAQATLNAKLSEVGL--TPFT 404 Query: 433 VPNGGVGLWVELPA-QVCSQQLFERALLEGVGVSPGAIFSNSNRYGHFLRICCGHPFTRE 491 GG+ W + ++ ++++ +RA +G+ ++PG F S + R G+ E Sbjct: 405 AARGGMFSWATIEGCELSAREIADRARQKGIWLAPGDFFHLSAPHQTSFRFNVGYADVPE 464 Query: 492 LDQALRRL 499 L LR L Sbjct: 465 LFDFLRGL 472 >gi|300310416|ref|YP_003774508.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 133 bits (334), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 122/461 (26%), Positives = 216/461 (46%), Gaps = 30/461 (6%) Query: 19 TAPAALAATPDNGRQPLYRRLAEHYQGAIQSGTLVAGDRMPSVRDLMRQHQVSLSTSLQT 78 +AP + AA P R P+ R++ + + AI + TL AG ++PS RDL + S +T Sbjct: 30 SAPESGAAKPAP-RTPVNRQIYQLIREAILAHTLPAGMQLPSSRDLALELGSSRNTVTYA 88 Query: 79 LRHMEEGGWLEARPRSGYFVRQPRRSAI-RPVQEPKSLMAIDPEQYAGIHEKVSKY---- 133 + G+LE+RP +G FV I V+ P+ L DP + + + + Sbjct: 89 YEQLLAEGYLESRPGAGTFVADTAPDQIPEAVERPEPL--TDPSGKSELSARGAMLTRQA 146 Query: 134 -IALRQSGAPRIDLSGMTCAPELYAV-ETLKQAAMRALRERPELLTSAMPHNGNATFRQA 191 + RQ GA + +TC P Y + L+ R R +LLT P G A R+ Sbjct: 147 GVGERQWGAFMPGVPDVTCVP--YKIWGRLQNKHWR--RSNADLLTYG-PGAGYAGLREQ 201 Query: 192 VARRA-LHHGMRIDHEEVVVTHGCIEALNLALRAVAGPGDTIAVESPTYFGLLQALENLG 250 +A + + +V++T G ++L++ ++ + GD+ VE P Y+G L +LG Sbjct: 202 IAEYLRVARSVNCTPSQVLITTGIHQSLDIVVKLLGEHGDSAWVEDPCYWGTRSVLNSLG 261 Query: 251 MKALEIPTSPHTGISVEALELAVRTYGNIK----GVVVVPNLQNPLGCIMPDEHKDKLVR 306 ++++ I + E + + + N++ + P+ Q PLG +M + L+ Sbjct: 262 IQSVPI------AVDQEGMRMRL---ANLRRPPRFICTTPSHQYPLGMVMSLSRRRMLLE 312 Query: 307 LCEELRLPLIEDDAYTELADGNVPPSSLKSRDRSGNVIYCASLNKVLAPGMRLGWMNGGR 366 ++ +IEDD +E G P +SL+ D V+Y + +K++ PG+R+G++ Sbjct: 313 YAATHKVWIIEDDYDSEFRYGGRPLASLQGMDTQDRVLYMGTFSKIMFPGLRIGFLVVPE 372 Query: 367 WHERVKMLKFTHT-RANEEWTQVTAADFIASPAYDRHLRRLRQLLKEQRERMAESIAAYF 425 R R + + Q T ADF+A + H+R++R L E+ + + +SI +F Sbjct: 373 SLARAFSTGIAELYRNGQVFLQATLADFMAEGHFASHIRKMRVLYAERLQLLQQSINRHF 432 Query: 426 PEGTRLNVPNGGVGLWVELPAQVCSQQLFERALLEGVGVSP 466 E + G+ L + LP + + E+AL G+ V P Sbjct: 433 GEKMTITGGEAGLHLVLGLPQECDDVLICEQALAAGIVVRP 473 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,528,686 Number of extensions: 62251 Number of successful extensions: 267 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 251 Number of HSP's successfully gapped: 10 Length of query: 509 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 420 Effective length of database: 1,198,455 Effective search space: 503351100 Effective search space used: 503351100 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)