BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0293.p (443 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311075|ref|YP_003775167.1| methyltransferase [Herbaspirill... 652 0.0 gi|300312539|ref|YP_003776631.1| methyltransferase [Herbaspirill... 315 5e-87 gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [... 75 8e-15 gi|300311388|ref|YP_003775480.1| TPR repeat containing protein [... 59 7e-10 >gi|300311075|ref|YP_003775167.1| methyltransferase [Herbaspirillum seropedicae SmR1] Length = 448 Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/441 (73%), Positives = 359/441 (81%) Query: 2 PEQQTTQIQPPHAARLNAAIDAHMAGRREEARAVYEAVLEDDPIEPVALHFYGIWLHQAG 61 P Q + + A L AIDAHMAGR ++A A+YEAVLE DPI P+ALH+YGIWLHQ G Sbjct: 7 PTQDPARAGAHYEALLRQAIDAHMAGRLDQACAIYEAVLEADPIHPLALHYYGIWLHQDG 66 Query: 62 RHAEALDKLELSSALEPENAAWHNDLGNVLFALGDLDGAAQAYGTALEVAPADHTIWNNL 121 +H EALDKLEL+SALEP+NA WHND GNVLFAL A QAY AL + P DHTIWNNL Sbjct: 67 QHDEALDKLELASALEPDNADWHNDRGNVLFALQQPALAEQAYADALALRPDDHTIWNNL 126 Query: 122 GATHMQRGRNEEAIAAFQRAVEIAPEFLPALLHLGNLFEAAGDKMQASHYQCRAYVLPPM 181 GA +Q+ + +AI+AF+RA++I P+FLP+LLHLG + EAAGDKMQASHYQCRAYVLPP+ Sbjct: 127 GAVLLQQDKRPDAISAFERALQIDPDFLPSLLHLGGIHEAAGDKMQASHYQCRAYVLPPL 186 Query: 182 EGKSWEMVGISFYFLGRLEEAAEAYRAWLASEPGNPIAAHMLAACSQLDVPTRASDRYLE 241 EGKSWEM+GISFYFLGRL EAAEAYRAWL EP NPIAAHMLAACSQ DVP RASDRY+E Sbjct: 187 EGKSWEMLGISFYFLGRLPEAAEAYRAWLREEPDNPIAAHMLAACSQADVPPRASDRYIE 246 Query: 242 SHFDRYAETFESNLLHSLGYRGPSLIGQGVALVTQAARQFATIDIGCGTGLCGTYLRPYS 301 SHFDRYAETFE+NLL SLGYRGP LI +G+AL+ A QFA IDIGCGTGLCG + PYS Sbjct: 247 SHFDRYAETFEANLLQSLGYRGPRLIAEGLALIAPPAHQFAAIDIGCGTGLCGGQVAPYS 306 Query: 302 HHLTGVDLAGKMLEKAAATGHYDQLEKAEITDYLLRHPQSCDLVTAADTMIYFGDLENVF 361 HHL GVDLAGKMLEKAAATGHY +LEKAEI YL HPQSCDLVTAADTMIYFGDL V Sbjct: 307 HHLVGVDLAGKMLEKAAATGHYARLEKAEIGHYLATHPQSCDLVTAADTMIYFGDLAPVM 366 Query: 362 KAVAAVLKPGGYFVFTVEVLTPQDGVEQGHRLHASGRYRHGRDYVRALLQAQGMEPLHQR 421 +AVA L+ GG+FVFTVE LT D QGH LHASGRYRHGRDYVR LLQA G LH Sbjct: 367 QAVALALRSGGHFVFTVEALTGADVAPQGHALHASGRYRHGRDYVRGLLQAHGFTLLHDS 426 Query: 422 DEVLREEVRQPVAGMLFVARR 442 D++LREEVRQPVAGMLFVARR Sbjct: 427 DQILREEVRQPVAGMLFVARR 447 >gi|300312539|ref|YP_003776631.1| methyltransferase [Herbaspirillum seropedicae SmR1] Length = 439 Score = 315 bits (807), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 186/418 (44%), Positives = 247/418 (59%), Gaps = 7/418 (1%) Query: 27 GRREEARAVYEAVLEDDPIEPVALHFYGIWLHQAGRHAEALDKLELSSALEPENAAWHND 86 GR EEA Y L + H+ G+ LHQ GRH E + + ++ P +A W ND Sbjct: 27 GRLEEAEEDYRVTLAMEEHHAPTQHYLGMLLHQRGRHEEGVTLMRQAALAAPADADWCND 86 Query: 87 LGNVLFALGDLDGAAQAYGTALEVAPADHTIWNNLGATHMQRGRNEEAIAAFQRAVEIAP 146 +GNVLFA D AAQAY AL + P D +W NLGAT +G+++ AIAA ++A+ AP Sbjct: 87 IGNVLFACSRFDEAAQAYQQALALRPDDAQLWTNLGATRRAQGQHQAAIAACEQALATAP 146 Query: 147 EFLPALLHLGNLFEAAGDKMQASHYQCRAYVLPPMEGKSWEMVGISFYFLGRLEEAAEAY 206 L AL L + GD+MQ+S YQC A+VLPP EGKS E++ ISFYFLGR+ EAAE Sbjct: 147 HSLAALHQLAEIHAHLGDRMQSSRYQCMAFVLPPHEGKSRELLAISFYFLGRVAEAAEVC 206 Query: 207 RAWLASEPGNPIAAHMLAACSQLDVPTRASDRYLESHFDRYAETFESNLLHSLGYRGPSL 266 R WL EPG+PIA HM AA + L T D Y+ FD YA+ F+SNL+ L YRGP + Sbjct: 207 RRWLQEEPGHPIANHMHAAYAGLPSHTVPRD-YIVRRFDDYADHFDSNLVTHLDYRGPQV 265 Query: 267 IGQGVALVTQAARQFATIDIGCGTGLCGTYLRPYSHHLTGVDLAGKMLEKAAATGHYDQL 326 + + A +D GCGTGLC L PY+ L GVDL+ ML AA G Y L Sbjct: 266 LNAVLQASLPANADMRVLDAGCGTGLCAPVLAPYALSLEGVDLSSNMLRHAAQHGRYSTL 325 Query: 327 EKAEITDYLLRHPQSCDLVTAADTMIYFGDLENVFKAVAAVLKPGGYFVFTVEVLTPQDG 386 +A++ +++ HP L+ A D +IY G L + F A L+ GG+ VFTVE+ G Sbjct: 326 AQADVVEWMTAHPSRYALIAACDVLIYCGQLASFFTAAQLALQEGGHLVFTVEL----AG 381 Query: 387 VEQ--GHRLHASGRYRHGRDYVRALLQAQGMEPLHQRDEVLREEVRQPVAGMLFVARR 442 E+ + LHASGR+RH R Y+ L A GM+ + R+E LR E++Q V G++ +ARR Sbjct: 382 AERPDSYYLHASGRFRHQRAYIEDCLHAAGMQVVMLREESLRVEMQQAVPGLVVLARR 439 >gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [Herbaspirillum seropedicae SmR1] Length = 603 Score = 75.5 bits (184), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 69/196 (35%), Positives = 99/196 (50%), Gaps = 9/196 (4%) Query: 23 AHMAGRREEARAVYEAVLEDDPIEPVALHFYGIWLHQAGRHAEALDKLELSSALEPENA- 81 AH+ GR +EA A Y+ VL + AL G L + GR+ EAL LE ++AL P+NA Sbjct: 87 AHL-GRDDEAVARYDLVLTVNADFVEALLARGAALRRLGRNREALADLERATALAPDNAD 145 Query: 82 AWHNDLGNVL---FALGDLDGAAQAYGTALEVAPADHTIWNNLGATHMQRGRNEEAIAAF 138 AW GNVL +A GD A ++Y A+ + P W NLG T + ++A+ A+ Sbjct: 146 AWFQR-GNVLHDSYAYGD---ARESYERAVALRPDFIEAWFNLGNTCKDGNQLDQALRAY 201 Query: 139 QRAVEIAPEFLPALLHLGNLFEAAGDKMQASHYQCRAYVLPPMEGKSWEMVGISFYFLGR 198 RA+E+ P+F A+ + G + +A RA L W G + L R Sbjct: 202 DRALEVQPDFFEAISNRGYVLFKMQRPAEALQAYDRALALDERAPDLWFNRGSTLEQLYR 261 Query: 199 LEEAAEAYRAWLASEP 214 EEA+E+YR A +P Sbjct: 262 FEEASESYRRAKALKP 277 >gi|300311388|ref|YP_003775480.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 658 Score = 59.3 bits (142), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 94/212 (44%), Gaps = 1/212 (0%) Query: 14 AARLNAAIDAHMAGRREEARAVYEAVLEDDPIEPVALHFYGIWLHQAGRHAEALDKLELS 73 A+R+ A H E + A +E ++ +P P L G L + R+ EA+ + S Sbjct: 127 ASRIGLANALHEKNDPEASVAYFEDAVKREPNAPGPLSHLGRALIECKRYNEAVAVILKS 186 Query: 74 SALEPENAAWHNDLGNVLFALGDLDGAAQAYGTALEVAPADHTIWNNLGATHMQRGRNEE 133 L+ A H LG A+ A +++ TA+ + P D N + ++++ R +E Sbjct: 187 LELQISFAPSHTALGEAFHAMEMYKEAIESHKTAILLDPQDTYAHNKIADSYLKLNRIDE 246 Query: 134 AIAAFQRAVEIAPEFLPALLHLGNLFEAAGDKM-QASHYQCRAYVLPPMEGKSWEMVGIS 192 A R +EIAP+ A + LG+ + + D+ A +A + ++ +G Sbjct: 247 AHEHLLRVIEIAPKDPNAYVKLGSSYFSTSDRFDDAMRMFNKALEVDSKHALTYNNIGAI 306 Query: 193 FYFLGRLEEAAEAYRAWLASEPGNPIAAHMLA 224 + G LE+A +R L P P A H +A Sbjct: 307 QHDHGDLEDAIGNFRKALELRPNYPTARHNIA 338 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,535,943 Number of extensions: 69098 Number of successful extensions: 287 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 272 Number of HSP's successfully gapped: 5 Length of query: 443 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 355 Effective length of database: 1,203,190 Effective search space: 427132450 Effective search space used: 427132450 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)