BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0286.p
         (177 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311082|ref|YP_003775174.1| transmembrane protein [Herbaspi...   283   5e-78
gi|300312390|ref|YP_003776482.1| lipoprotein [Herbaspirillum ser...    63   1e-11

>gi|300311082|ref|YP_003775174.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 177

 Score =  283 bits (725), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 150/179 (83%), Positives = 158/179 (88%), Gaps = 6/179 (3%)

Query: 1   MPSPVSLMQRARPRLAAALLAAAALS---GCASLLQPPVQQPLGXEPEEQVVARLGAPTN 57
           MPS V L+Q  RPRLAAALLA +AL    GCASLLQPPVQ     EPE+QVVARLG PTN
Sbjct: 1   MPSFVPLLQSTRPRLAAALLALSALCALSGCASLLQPPVQP---GEPEDQVVARLGPPTN 57

Query: 58  VYPDGNGRVFEYAAGAFGQYQYMARIGPDHRLISYEQVWTLQNFHAIRPKQDTKLDVLRR 117
           VYPDGN RVFEY AG F QYQYMARIGPDHRLISYEQVWT++NF AIRPKQDTKLDVLRR
Sbjct: 58  VYPDGNVRVFEYGAGPFSQYQYMARIGPDHRLISYEQVWTIENFRAIRPKQDTKLDVLRR 117

Query: 118 VGRPTEVTRYARIPFEAWNYGFKESGVWNSQMTVYFNDQGIVEKIENGPDPRFDDSRFR 176
           VGRPTEVTRYARIPFEAWNYG+KESGVWNSQMTVYF DQGIVEK+ENGPDPR+DDSRFR
Sbjct: 118 VGRPTEVTRYARIPFEAWNYGYKESGVWNSQMTVYFTDQGIVEKVENGPDPRYDDSRFR 176


>gi|300312390|ref|YP_003776482.1| lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 175

 Score = 63.2 bits (152), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 62/145 (42%), Gaps = 7/145 (4%)

Query: 1   MPSPVSLMQRARPRLAAALLAAAALSGCASLLQPPVQQPL-----GXEPEEQVVARLGAP 55
           M  P     R       A L A A+ GC    +P  +  L     G   E  V   +G P
Sbjct: 1   MTDPFFTRLRRHAGKFGAFLVALAMLGCDRNGKPIEEFGLDKLQKGISSEADVRDVMGQP 60

Query: 56  TNVYPDGNG-RVFEYAAGAFGQYQYMARIGPDHRLISYEQVWTLQNFHAIRPKQDTKLDV 114
             V+ DG G R  EY  G  G   +M  IG    LI Y+QV T ++F  IR    T   +
Sbjct: 61  DTVWDDGQGARTLEYPKGPQGIRTWMFSIGASGTLIDYQQVLTQEHFDTIRAGM-TAEQI 119

Query: 115 LRRVGRPTEVTRYARIPFEAWNYGF 139
            R+ GRP  V ++ R   E W++ +
Sbjct: 120 RRQFGRPRSVVQFGRKNEEVWDWKY 144


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 518,586
Number of extensions: 19904
Number of successful extensions: 31
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 2
Length of query: 177
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 98
Effective length of database: 1,245,805
Effective search space: 122088890
Effective search space used: 122088890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)