BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0280.p
         (334 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311086|ref|YP_003775178.1| hypothetical protein Hsero_1757...   575   e-165

>gi|300311086|ref|YP_003775178.1| hypothetical protein Hsero_1757
           [Herbaspirillum seropedicae SmR1]
          Length = 334

 Score =  575 bits (1482), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 271/334 (81%), Positives = 296/334 (88%)

Query: 1   MQLTLDRAEQFARMPLAYLRQEYPNHIMHLLNDEGDVLSPRAMHPVFYGCYDWHSAVHGY 60
           MQLTL+RAE+FARMPLAYLRQEYPNHIMH+LND GDVLSPRAMHPVFYGCYDWHSAVHG+
Sbjct: 1   MQLTLERAEEFARMPLAYLRQEYPNHIMHVLNDAGDVLSPRAMHPVFYGCYDWHSAVHGF 60

Query: 61  WLLLRCLRLYPSMAVTDQITAIFDEHFTPELMERETDYFRAPNRAPFERPYGFGWLLALD 120
           WLLLRC++ YP +    ++ AIFDEHFTPELMERETDYFR   RA FERPYGFGW+LALD
Sbjct: 61  WLLLRCVQRYPELPARAEVEAIFDEHFTPELMERETDYFRVGGRASFERPYGFGWILALD 120

Query: 121 QELLMSAHPRAAEWHAAMKPLTTEIRRRLFDYLSKLSYPIRVGTHFNTAFSLALALDYAR 180
           QEL  S  PRAA W  AM+PLT EIRRRL +YLSKLSYPIRVGTH+NTAF+LAL+LD AR
Sbjct: 121 QELAQSTLPRAASWRTAMQPLTLEIRRRLLEYLSKLSYPIRVGTHYNTAFALALSLDQAR 180

Query: 181 HVTDTELEALIVDWSNQHYGKDTDYPAHYEPGGDEFISGALTEALLMSKVLSSDAFTGWF 240
           HV D ELE +I+  + ++YGKDTDYPAHYEPGGDE+ISGALTEALLMSKVLS+ AF  WF
Sbjct: 181 HVKDIELEQVILASAQRYYGKDTDYPAHYEPGGDEYISGALTEALLMSKVLSAQAFAAWF 240

Query: 241 DLYLPRIAEVTQITHPAYVSDPTDPKVAHLDGLNLSRAWCMKNVLRHLPANHAARSAIEA 300
           D YLPR+AE+ QI  PA VSDPTDPK+AHLDGLNLSRAWCMK VLRHLPA HAARSAIEA
Sbjct: 241 DQYLPRVAEIEQIMQPALVSDPTDPKIAHLDGLNLSRAWCMKTVLRHLPAGHAARSAIEA 300

Query: 301 AIQRHIAASIDQVVGSHYSGGHWLASFAMLALED 334
           AIQRHIAASIDQVVGSHYSGGHWLASFAMLALED
Sbjct: 301 AIQRHIAASIDQVVGSHYSGGHWLASFAMLALED 334


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,119,883
Number of extensions: 46438
Number of successful extensions: 128
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 248
Effective length of database: 1,212,660
Effective search space: 300739680
Effective search space used: 300739680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 131 (55.1 bits)