BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0277.p
         (246 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311089|ref|YP_003775181.1| LamB/YcsF family protein [Herba...   487   e-139
gi|300313397|ref|YP_003777489.1| LamB/YcsF family protein [Herba...   167   1e-42

>gi|300311089|ref|YP_003775181.1| LamB/YcsF family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 246

 Score =  487 bits (1254), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 237/245 (96%), Positives = 244/245 (99%)

Query: 1   MHIDLNADLGEGCDTDEQLLTLVSSANIACGWHAGDASTMRRSVRWAIQNHVAIGAHPSF 60
           MHIDLNADLGEGCDTDEQLLTLVSSANIACGWHAGDA+TMRRSVRWAIQNHVAIGAHPSF
Sbjct: 1   MHIDLNADLGEGCDTDEQLLTLVSSANIACGWHAGDANTMRRSVRWAIQNHVAIGAHPSF 60

Query: 61  PDRENFGRSAMQLPPEDIVSGMLYQLGALDAIVRAEGGRMTHVKPHGALYNQAAKDAVLA 120
           PDRENFGRSAMQLPPE+IVSGMLYQLGAL+AIVRAEGGRMTHVKPHGALYNQAAKDAVLA
Sbjct: 61  PDRENFGRSAMQLPPEEIVSGMLYQLGALEAIVRAEGGRMTHVKPHGALYNQAAKDAVLA 120

Query: 121 NAICAAIRTFNPELSLYGLAGSELIAAARHADLNAVEEVFADRAYEADGSLVARSKPGAM 180
           NAICAAIRTFNPELSLYGLAGSELIAAARHADLNAVEEVFADRAYEADGSLVARSKPGA+
Sbjct: 121 NAICAAIRTFNPELSLYGLAGSELIAAARHADLNAVEEVFADRAYEADGSLVARSKPGAL 180

Query: 181 IENDADAIAQTLMLVKQKKVKAIDGSLVEVNAQTVCLHGDGAHALDFARQIRARLHAEQI 240
           I+NDADAIAQTLMLVKQKKVKAIDGS+VEVNAQTVCLHGDGAHALDFARQIRARLH E+I
Sbjct: 181 IDNDADAIAQTLMLVKQKKVKAIDGSIVEVNAQTVCLHGDGAHALDFARQIRARLHEERI 240

Query: 241 AVRAA 245
           AVRAA
Sbjct: 241 AVRAA 245


>gi|300313397|ref|YP_003777489.1| LamB/YcsF family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 252

 Score =  167 bits (422), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 98/249 (39%), Positives = 137/249 (55%), Gaps = 9/249 (3%)

Query: 3   IDLNADLGEGCD-------TDEQLLTLVSSANIACGWHAGDASTMRRSVRWAIQNHVAIG 55
           +DLN+D+GEG          D  +L L+SSANIA G+HAGD +TMRR+V  A Q+ VAIG
Sbjct: 4   VDLNSDMGEGFGPWTIGDGVDAAILPLISSANIATGFHAGDPNTMRRTVELARQHGVAIG 63

Query: 56  AHPSFPDRENFGRSAMQLPPEDIVSGMLYQLGALDAIVRAEGGRMTHVKPHGALYNQAAK 115
           AHP F D   FGR  +  P  ++V+ MLYQLGAL    R  G  + H+KPHGALY   A+
Sbjct: 64  AHPGFRDLVGFGRRHLNAPAIELVNDMLYQLGALREFARLNGLPLQHIKPHGALYMHLAR 123

Query: 116 DAVLANAICAAIRTFNPELSLYGLAGSELIAAARHADLNAVEEVFADRAYEADGSLVARS 175
           D   A      +R  +P L L+ + GS +   A+      V E +ADR Y+  GS+V   
Sbjct: 124 DEEAARVFVQTLRQLDPNLLLFCMHGSAVWRVAQELQQAVVCEFYADRDYDNSGSIVFTR 183

Query: 176 KPGAMIENDADAIAQTLMLVKQKKVKAIDGSLVEVNAQTVCLHGDGAHALDFARQIRARL 235
           + GA+  + A   A+ L    +  V+ ++G  + +   +VC+H D   AL   +  R  L
Sbjct: 184 RVGAL--DAAQVAAKVLRACCEGVVRTVEGRDIPIAFDSVCIHSDTPGALALVQATRNSL 241

Query: 236 HAEQIAVRA 244
            A  IA+ A
Sbjct: 242 EAADIAIAA 250


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 775,358
Number of extensions: 30888
Number of successful extensions: 104
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 2
Length of query: 246
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 163
Effective length of database: 1,226,865
Effective search space: 199978995
Effective search space used: 199978995
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)