BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0275.p
         (217 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311091|ref|YP_003775183.1| allophanate hydrolase subunit 1...   383   e-108
gi|300313400|ref|YP_003777492.1| allophanate hydrolase subunit 1...    60   1e-10

>gi|300311091|ref|YP_003775183.1| allophanate hydrolase subunit 1
           [Herbaspirillum seropedicae SmR1]
          Length = 216

 Score =  383 bits (983), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 189/214 (88%), Positives = 196/214 (91%)

Query: 4   PQLHPLGDRALLCSLPPPATLPQQQRIWALATLASEWEEVSEVVPGMNNLTLITKRPVAD 63
           PQLHPLGDRALLCSLP PATLPQQQRIWALA LA +WEEVSEVVPGMNNLTLIT RPV D
Sbjct: 3   PQLHPLGDRALLCSLPAPATLPQQQRIWALAELAGQWEEVSEVVPGMNNLTLITTRPVVD 62

Query: 64  LDTLTQRVLKSWPKLGTTASEGRTVEIPVVYGGSAGPDLDNVARHTGLSTREVIERHSSA 123
           L+ L  R+  +WPKL    S GRTVEIPVVYGGSAGPDLDNVARHTGLST EVI RHS+A
Sbjct: 63  LEILAHRIETTWPKLSGERSVGRTVEIPVVYGGSAGPDLDNVARHTGLSTEEVIARHSNA 122

Query: 124 EYVVYFLGFLPGFAYMGGLDASLATPRHTTPRVSIPAGSVGIGGEQTGIYPMASPGGWQL 183
           EYVVYFLGFLPGFAYMGGLDASLATPRHTTPRVSIPAGSVGIGGEQTG+YPMASPGGWQL
Sbjct: 123 EYVVYFLGFLPGFAYMGGLDASLATPRHTTPRVSIPAGSVGIGGEQTGVYPMASPGGWQL 182

Query: 184 IGRTGLQLFDPSQQPPTLLRPGDRVRFTVERVAS 217
           IGRT LQLFDPSQ+PPTLLRPGDRVRFTVERVAS
Sbjct: 183 IGRTTLQLFDPSQEPPTLLRPGDRVRFTVERVAS 216


>gi|300313400|ref|YP_003777492.1| allophanate hydrolase subunit 1
           [Herbaspirillum seropedicae SmR1]
          Length = 299

 Score = 60.5 bits (145), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 27/160 (16%)

Query: 84  EGRTVEIPVVYGGS----------------AGPDLDNVARHTGLS-TREVIERHSSAEYV 126
           + R +E+PV+Y                   +  DL   AR  G   T+  I  HS   + 
Sbjct: 95  DTRIIEVPVLYDDPWTNETQSRFRDRHQDPSSTDLQYAARINGYDETQAFIAAHSGTPWF 154

Query: 127 VYFLGFLPGFAYMGGL---DASLATPRHTTPRVSIPAGSVGIGGEQTGIYPMASPGGWQL 183
           V  +GF+ G  +M  +   D  L  P++  PR   P  ++G GG    IY +   GG+Q+
Sbjct: 155 VSMVGFVAGLPFMYQMVEQDRQLQVPKYLRPRTDTPKLTLGHGGCFGCIYSVRGAGGYQM 214

Query: 184 IGRTGLQLFDPSQQPPTL------LRPGDRVRFT-VERVA 216
            G T   ++DP Q  P L       R GD V+F  ++R A
Sbjct: 215 FGVTPAPIYDPQQGLPYLRESMVFFRAGDIVQFKPIDRTA 254


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 820,006
Number of extensions: 36657
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 2
Length of query: 217
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 136
Effective length of database: 1,236,335
Effective search space: 168141560
Effective search space used: 168141560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)