BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0252.p
         (141 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311112|ref|YP_003775204.1| thioesterase [Herbaspirillum se...   270   3e-74
gi|300313596|ref|YP_003777688.1| 4-hydroxybenzoyl-CoA thioestera...    64   5e-12

>gi|300311112|ref|YP_003775204.1| thioesterase [Herbaspirillum
           seropedicae SmR1]
          Length = 141

 Score =  270 bits (690), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 126/141 (89%), Positives = 132/141 (93%)

Query: 1   MSSHEATASKPLYVSQQRIRWGDMDAFGHVNNTLYFRFMEQCRIEWLEEVFGPTIAGEEG 60
           MSSH    SK LY+S+Q IRWGDMDAFGHVNNT+YFRFMEQCRIEWLEEVFGPTIAGEEG
Sbjct: 1   MSSHPQANSKQLYLSRQTIRWGDMDAFGHVNNTVYFRFMEQCRIEWLEEVFGPTIAGEEG 60

Query: 61  PVIVNAHCNFRRQMKYPASILVQMGAGHLGRTSVETTYVIRDAADEQIIYADGAAKIVWV 120
           PVIVNAHCNFRRQMKYPA I V+M AGHLGRTSVETTY+IRDAADEQIIYADGAAKIVWV
Sbjct: 61  PVIVNAHCNFRRQMKYPARICVEMSAGHLGRTSVETTYIIRDAADEQIIYADGAAKIVWV 120

Query: 121 DFKKEKSTALPEKLRQLLTSL 141
           DFKKEKSTALPE+LRQLLTSL
Sbjct: 121 DFKKEKSTALPEQLRQLLTSL 141


>gi|300313596|ref|YP_003777688.1| 4-hydroxybenzoyl-CoA thioesterase
           [Herbaspirillum seropedicae SmR1]
          Length = 150

 Score = 63.9 bits (154), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 59/123 (47%), Gaps = 2/123 (1%)

Query: 20  RWGDMDAFGHVNNTLYFRFMEQCRIEWLEEVFGPTIA-GEEGPVIVNAHCNFRRQMKYPA 78
           RW D D +GHVNN +Y+ + +     +L +     I  GE   +++   CN+   + +P 
Sbjct: 23  RWMDNDVYGHVNNVVYYSWFDTAVNHYLVQQGALDIEHGEVIGLVIETQCNYFASVAFPD 82

Query: 79  SILVQMGAGHLGRTSVETTYVIRDAADEQIIYADGAAKIVWVDFKKEKSTALPEKLRQLL 138
            I V +   HLGR+SV     I  A +E    A G    V+VD    +  ALPE LR  L
Sbjct: 83  LIEVGVRVAHLGRSSVRYELGIFKAGEESAA-ARGHFVHVYVDRASRRPVALPEALRAAL 141

Query: 139 TSL 141
             L
Sbjct: 142 MPL 144


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 422,364
Number of extensions: 15269
Number of successful extensions: 32
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 2
Length of query: 141
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 65
Effective length of database: 1,260,010
Effective search space: 81900650
Effective search space used: 81900650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)