BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0247.p
         (170 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311117|ref|YP_003775209.1| alpha/beta hydrolase superfamil...   210   6e-56

>gi|300311117|ref|YP_003775209.1| alpha/beta hydrolase superfamily
           protein [Herbaspirillum seropedicae SmR1]
          Length = 263

 Score =  210 bits (534), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 109/164 (66%), Positives = 134/164 (81%)

Query: 1   VDKVILFGHSVGGGMAVSAAAQWPQRVLAVITESAQAFVEDRTLQGIQEARTRFADPAQL 60
           + + +L GHSVGGGMA++AAA+ P++V+AVITESAQAFVEDRTLQGI++AR +FA+P QL
Sbjct: 99  LTQAVLLGHSVGGGMAIAAAAELPEQVVAVITESAQAFVEDRTLQGIRKAREQFANPDQL 158

Query: 61  ARLAKYHGNDLQQARWVLSAWIDTWLSPSFAHWSLAPMLERLVCPVLALHGDLDEFGSLA 120
           ARLA++HG D  +A+WVL AW +TWL+P FA WSL P L RL CPVLA+HGD DE+GSLA
Sbjct: 159 ARLARHHGQDQDKAQWVLEAWTETWLAPEFAAWSLTPALARLHCPVLAIHGDEDEYGSLA 218

Query: 121 HPRMIASLPAAFPGQGESRMLAQCGHVPHREQADQVMREAREFL 164
           HP  IA+ P AFPGQG S +L+ CGHVPHREQ D V+R   EFL
Sbjct: 219 HPHRIATQPQAFPGQGRSLILSGCGHVPHREQPDAVLRAVVEFL 262


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.135    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 527,411
Number of extensions: 22201
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 91
Effective length of database: 1,245,805
Effective search space: 113368255
Effective search space used: 113368255
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)