BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0245.p
         (152 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311118|ref|YP_003775210.1| DNA-binding repressor transcrip...   201   2e-53
gi|300310215|ref|YP_003774307.1| DNA-binding repressor transcrip...    59   2e-10

>gi|300311118|ref|YP_003775210.1| DNA-binding repressor
           transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 171

 Score =  201 bits (511), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 93/129 (72%), Positives = 109/129 (84%)

Query: 1   LTVLGDRLAQERGRCGHTQKSVADQLDITARTQIKYEIGETAPDAYYLHGLGEIGIDITY 60
           LT LGDRLA+ER RCGHTQKS+AD LDITARTQIKYEIGETAPDAYYLHGL  IGID+TY
Sbjct: 9   LTTLGDRLAKERSRCGHTQKSIADNLDITARTQIKYEIGETAPDAYYLHGLDAIGIDVTY 68

Query: 61  VLTGVRGSTPTQQESELIACYRAVDPVLRSSLVQLLSGLSQMAKTGKKKRDLPAATEAKR 120
           VLTGVRG+TP+ +ES+LIACYR+VD   RS+L QLL+G++ M +  +KKRD  A  E  R
Sbjct: 69  VLTGVRGATPSPEESQLIACYRSVDKATRSALTQLLAGMADMVRASRKKRDFFAVPEEVR 128

Query: 121 IRPGRQRKV 129
           +RPGRQRK+
Sbjct: 129 VRPGRQRKL 137


>gi|300310215|ref|YP_003774307.1| DNA-binding repressor
           transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 145

 Score = 58.5 bits (140), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 64/110 (58%), Gaps = 2/110 (1%)

Query: 1   LTVLGDRLAQERGRCGHTQKSVADQLDITARTQIKYEIGETAPDAYYLHGLGEIGIDITY 60
           ++  G+RL  ER R G +Q++ A    +  + QI YE G+T PD  ++  + +IG+D++Y
Sbjct: 3   ISPFGERLKSERLRLGFSQEAFAAVGGVRKQAQISYEQGKTLPDIGFMAAVSKIGVDVSY 62

Query: 61  VLTGV-RGSTPTQQESELIACYRAVDPVLRSSLVQLLSGLSQMAKTGKKK 109
           V+ G+      T  E +++  +R +D + ++ ++ ++ G +  A+ G+K 
Sbjct: 63  VIFGIPTADALTSDEQQVLQGFRRLDIIGKARVLGVIEGAAP-AEAGRKN 111


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.131    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 387,960
Number of extensions: 12101
Number of successful extensions: 32
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 2
Length of query: 152
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 75
Effective length of database: 1,255,275
Effective search space: 94145625
Effective search space used: 94145625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 126 (53.1 bits)