BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0242.p
         (249 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311403|ref|YP_003775495.1| polymixin resistance glycosyltr...    71   8e-14

>gi|300311403|ref|YP_003775495.1| polymixin resistance
           glycosyltransferase transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 318

 Score = 71.2 bits (173), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 88/217 (40%), Gaps = 1/217 (0%)

Query: 20  GEYFAVMAADLQEPPELVLQFFEIMRGDEFDVVVGTREGRADPLRNRLSANLFWSIYRKF 79
           G+    + ADLQ PPE +      MR + +D V   R  R D      ++     +  K 
Sbjct: 88  GDIVVTLDADLQNPPEEIGNLVAKMR-EGYDYVGSIRRKRQDSAWRTYASKAMNRLREKI 146

Query: 80  VVSQMPAGGVDVFGCNRAFRDCLLSCEESNTSLIALLFWLGFRRKEISYSRRERSHGVSA 139
              +M   G  +    R   D +  C E NT + AL +       EI     ERS G S 
Sbjct: 147 TRIKMTDQGNMLRAYGRNVIDLVNKCREINTFVPALAYTFSRNPTEIVVEHEERSAGESK 206

Query: 140 WTLSKKINYLMDSIFAFTDLPIKLLLALGVAGLAVSIPLGLVVLFARISGFLHVPGYATT 199
           ++L   I    D +  F+ +P++    LG+     S  L ++++  R+     V G  T 
Sbjct: 207 YSLYSLIRLNFDLVTGFSLVPLQFFSLLGIGLSFASAALFILIVLRRLLIGAEVGGVFTL 266

Query: 200 VLIVLFFGGANTLGLGLVGSYAWRAYENTKRRPLAIV 236
             I  F  G     +GL+G Y  R Y   + RP  +V
Sbjct: 267 FAITFFLMGVILFSIGLLGEYIGRIYMQVRARPRYVV 303


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.144    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 707,867
Number of extensions: 26470
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 166
Effective length of database: 1,226,865
Effective search space: 203659590
Effective search space used: 203659590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)