BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0241.p
         (311 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313481|ref|YP_003777573.1| isoleucine patch superfamily ac...   144   1e-35

>gi|300313481|ref|YP_003777573.1| isoleucine patch superfamily
           acetyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 188

 Score =  144 bits (363), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 79/154 (51%), Positives = 101/154 (65%), Gaps = 2/154 (1%)

Query: 1   MSFYVHPNALC-ESAHIGENTRIWAFAHILPQAVIGSDCNICDGVFVENDVVVGDRVTIK 59
           M+++ H  AL  E A IGE TRIW +AHI   A IG  C+    VFV NDV++G+ V ++
Sbjct: 1   MTYHAHETALVDEGAQIGEATRIWHWAHICSGARIGERCSFGQNVFVGNDVLIGNNVKVQ 60

Query: 60  CGVQLWDGVHLENDVFIGPNVTFTNDLRPRSK-QYPASFAKTLVCEGASIGANATILPGL 118
             V ++D V LE+DVF GP++ FTN   PRS       + +TLV  GASIGANATI+ G 
Sbjct: 61  NNVSIYDAVTLEDDVFCGPSMVFTNVNNPRSAVSRKHEYRRTLVRRGASIGANATIVCGH 120

Query: 119 VIGRSAMIGAGAVVTQSVPPYAIVVGNPARITGY 152
            IG  A IGAGAVVT+ VP YA++VG PAR  G+
Sbjct: 121 EIGEYAFIGAGAVVTRDVPAYALMVGTPARRIGW 154


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,003,055
Number of extensions: 42124
Number of successful extensions: 146
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 226
Effective length of database: 1,217,395
Effective search space: 275131270
Effective search space used: 275131270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)