BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0237.p (271 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311120|ref|YP_003775212.1| metal ion ABC transporter perip... 468 e-133 gi|300310325|ref|YP_003774417.1| metal ion ABC transporter perip... 271 4e-74 gi|300314030|ref|YP_003778122.1| metal ion ABC transporter perip... 267 8e-73 gi|300310887|ref|YP_003774979.1| metal ion ABC transporter perip... 192 3e-50 gi|300311637|ref|YP_003775729.1| metal ion ABC transporter perip... 162 2e-41 >gi|300311120|ref|YP_003775212.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 274 Score = 468 bits (1203), Expect = e-133, Method: Compositional matrix adjust. Identities = 239/265 (90%), Positives = 252/265 (95%) Query: 7 IKRIAAAAALTLVLAPHGASAQDKNKIKVGISVGSAEAIFDVVKKVAARDGLEIQTVVFS 66 IKR+AA AL+L L P AQDK KIKVGISVGSAEAIFDVVKKVAARDGLEIQTVVFS Sbjct: 10 IKRLAAIGALSLALVPQLGQAQDKQKIKVGISVGSAEAIFDVVKKVAARDGLEIQTVVFS 69 Query: 67 DYLQPNAALASGDLDANAFQHRPYLESQIAARGYKIVPVGLTITAPLGIYSRKFKSVDQL 126 DYLQPNAALA+GDLDANAFQHRPYLESQIAARGY+IVPVGLTITAPLGIYSRKF+SV+QL Sbjct: 70 DYLQPNAALAAGDLDANAFQHRPYLESQIAARGYRIVPVGLTITAPLGIYSRKFRSVEQL 129 Query: 127 PNGAQVGIQNDPSNGNRALLLLQKAGLIKLKPGVGENGVNATPLDIIDNPRKLKLIELDA 186 P GA +GIQNDPSNGNRALLLLQKAGLI+LKPGVGENGVNATPLD+I+NPRKLKL+ELDA Sbjct: 130 PQGAAIGIQNDPSNGNRALLLLQKAGLIRLKPGVGENGVNATPLDVIENPRKLKLVELDA 189 Query: 187 AQLPRSLDDLAAASINNDYAYKAGLSLQKDTIAVEDPRGRYANIIATRAEDKDKPWARKL 246 AQLPRSLDDLAAASINNDYA+KAGLSLQKDTIAVEDPRGRYANIIATRAEDKD+PW RKL Sbjct: 190 AQLPRSLDDLAAASINNDYAFKAGLSLQKDTIAVEDPRGRYANIIATRAEDKDRPWVRKL 249 Query: 247 VQAYQSEEVRKFIETEFKGSLVPAF 271 VQAY SEEVRKFIETEFKGSLVPAF Sbjct: 250 VQAYHSEEVRKFIETEFKGSLVPAF 274 >gi|300310325|ref|YP_003774417.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 265 Score = 271 bits (693), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 146/257 (56%), Positives = 195/257 (75%), Gaps = 7/257 (2%) Query: 15 ALTLVLAPHGASAQDKNKIKVGISVGSAEAIFDVVKKVAARDGLEIQTVVFSDYLQPNAA 74 A LV AP A AQD+ IK+G++ G I + VKK+ +DG++++ + F+DY+QPNAA Sbjct: 16 AAGLVSAP--AFAQDQ--IKMGVTAGPHAEIMEQVKKLLEKDGVQMKVIEFTDYIQPNAA 71 Query: 75 LASGDLDANAFQHRPYLESQIAARGYKIVPVGLTITAPLGIYSRKFKSVDQLPNGAQVGI 134 LA+GDLDAN++QH+PYL++QI RGYK V VG TIT P+G+YS+K KS++ L GA+VG+ Sbjct: 72 LAAGDLDANSYQHQPYLDAQIKDRGYKFVSVGSTITFPMGVYSKKIKSLNDLKQGARVGV 131 Query: 135 QNDPSNGNRALLLLQKAGLIKLKPGVGENGVNATPLDIIDNPRKLKLIELDAAQLPRSLD 194 NDP+NG RALL+LQ G+IKLK + G+ ATPLDI++NP+K+K++ELDAAQLPRSLD Sbjct: 132 PNDPTNGGRALLVLQAKGVIKLK---ADAGLKATPLDIVENPKKIKIVELDAAQLPRSLD 188 Query: 195 DLAAASINNDYAYKAGLSLQKDTIAVEDPRGRYANIIATRAEDKDKPWARKLVQAYQSEE 254 D AA IN +YA AGLS KD IAVE G YAN+IA R DKDKPW KLV+AY S E Sbjct: 189 DFDAAVINGNYAESAGLSPTKDAIAVEASTGPYANVIAVRIADKDKPWVAKLVKAYHSPE 248 Query: 255 VRKFIETEFKGSLVPAF 271 V+KF+ ++KGS++ ++ Sbjct: 249 VKKFVLEKYKGSVITSW 265 >gi|300314030|ref|YP_003778122.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 276 Score = 267 bits (682), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 130/258 (50%), Positives = 187/258 (72%), Gaps = 6/258 (2%) Query: 17 TLVLAPHGASAQDKNKIKVGISVGSAEAIFDVVKKVAARD--GLEIQTVVFSDYLQPNAA 74 +LVL A+ Q I+VG++ G IF+ ++V RD G +++ + F+DY+QPNAA Sbjct: 22 SLVLNAQAAADQ---VIRVGVTSGPHAQIFEQARRVFERDNPGYKVKIIEFNDYIQPNAA 78 Query: 75 LASGDLDANAFQHRPYLESQIAARGYKIVPVGLTITAPLGIYSRKFKSVDQLPNGAQVGI 134 L +G+LDAN++QHRP+L +QI RGYK+ G T+ P+ IYSRK++ ++ +P GA++GI Sbjct: 79 LDAGELDANSYQHRPFLNAQIKTRGYKLYAEGKTMIGPMAIYSRKYRKLEDVPVGARIGI 138 Query: 135 QNDPSNGNRALLLLQKAGLIKLKPGVGE-NGVNATPLDIIDNPRKLKLIELDAAQLPRSL 193 NDP+N +R LLLLQK G IKL+ G+ G NATP+DI +NP+K K +E+DAAQLPR+L Sbjct: 139 PNDPANESRVLLLLQKHGFIKLRAGIDPLTGTNATPIDITENPKKWKFVEIDAAQLPRTL 198 Query: 194 DDLAAASINNDYAYKAGLSLQKDTIAVEDPRGRYANIIATRAEDKDKPWARKLVQAYQSE 253 DDL A+++N DYA KAGL+ +D++ VE YA +IA R +D+ +PW KLVQAYQS Sbjct: 199 DDLDASAVNADYAAKAGLNPARDSLVVESGDSPYACLIAVREKDRAQPWLGKLVQAYQSP 258 Query: 254 EVRKFIETEFKGSLVPAF 271 EV+++IETEFKG ++ A+ Sbjct: 259 EVKRYIETEFKGGILAAW 276 >gi|300310887|ref|YP_003774979.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 263 Score = 192 bits (487), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 112/267 (41%), Positives = 160/267 (59%), Gaps = 9/267 (3%) Query: 6 IIKRIAAAAALTLVLAPHGASAQDKNKIKVGISVGSAEAIFDVVKKVAARDGLEIQTVVF 65 +I + A AAL + GA A DK I V AE I + +K A++G+++Q VF Sbjct: 5 LIPHLFAGAALAFSV---GAHAADKLVI-AATPVPHAE-ILEHIKPALAKEGIDLQVKVF 59 Query: 66 SDYLQPNAALASGDLDANAFQHRPYLESQIAARGYKI-VPVGLTITAPLGIYSRKFKSVD 124 +DY+QP A +D N F H+PYL+ + I VPV P YS+K+K + Sbjct: 60 TDYVQPAAQTNEKQVDGNFFLHQPYLDQFKKSHKNDIEVPVAKVHVEPFAAYSQKYKKIA 119 Query: 125 QLPNGAQVGIQNDPSNGNRALLLLQKAGLIKLKPGVGENGVNATPLDIIDNPRKLKLIEL 184 +PNGA + I NDPSN RALLLL + GLIKLK ++AT DI++NP+KLK L Sbjct: 120 DIPNGATIAIPNDPSNSGRALLLLARNGLIKLK---DNTNISATQKDIVENPKKLKFRAL 176 Query: 185 DAAQLPRSLDDLAAASINNDYAYKAGLSLQKDTIAVEDPRGRYANIIATRAEDKDKPWAR 244 +AA LPR L+ + A IN +YA +A L+ KD++ +ED YAN++ R ++KD P + Sbjct: 177 EAATLPRVLNQVDVALINTNYALEAKLNPVKDSLFIEDANSPYANLLVAREDNKDSPAIK 236 Query: 245 KLVQAYQSEEVRKFIETEFKGSLVPAF 271 KL A S +V+KFIE +++G++VPAF Sbjct: 237 KLAAALNSPDVKKFIEEKYQGAIVPAF 263 >gi|300311637|ref|YP_003775729.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 268 Score = 162 bits (411), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 103/246 (41%), Positives = 139/246 (56%), Gaps = 17/246 (6%) Query: 26 SAQDKNKIKVGISVGSAEAIFDVVKKVAARDGLEIQTVVFSDYLQPNAALASGDLDANAF 85 +AQ +K+++G+ G+ V K A R G+++Q V F+D+ PN AL +GDLD N F Sbjct: 18 AAQAADKLRIGVVPGAYGDSVAVAAKEAKRQGIDVQVVEFTDWTTPNVALDAGDLDLNYF 77 Query: 86 QHRPYLESQIAARGYKIVPVGLTITAPLGIYSRKFKSVDQLPNGAQVGIQNDPSNGNRAL 145 QH+P+L++ I GYK+ G I + +G+YS K+KS+ LP GA+VGI NDP N RAL Sbjct: 78 QHQPFLDNAIQKNGYKLASAGTGILSNVGLYSLKYKSLTALPQGAKVGIANDPVNQGRAL 137 Query: 146 LLLQKAGLIKLKPGVGENGVNATPLDIIDNPRKLKLIELDAAQLPRSLDDLAAASINNDY 205 LLLQ GLIKLKP VG G + DIIDNPRKL +E++ QL R D+ A + Sbjct: 138 LLLQNVGLIKLKPKVGYLG---SIDDIIDNPRKLSFVEVEGPQLVRITPDVDLAQGYPHF 194 Query: 206 AYKA-------GLSLQKDTIAVEDPRGRYANIIATRAEDKDKPWARKLVQAYQ-SEEVRK 257 A GL+ +ED R+A TRA + P +K +Q YQ S VR Sbjct: 195 IVAAKAFDPSSGLAYS----GIED--ARFAIQFVTRANRVNDPVVQKFIQIYQNSAAVRA 248 Query: 258 FIETEF 263 I F Sbjct: 249 DIGRAF 254 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.134 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 727,095 Number of extensions: 28671 Number of successful extensions: 115 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 108 Number of HSP's successfully gapped: 5 Length of query: 271 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 187 Effective length of database: 1,222,130 Effective search space: 228538310 Effective search space used: 228538310 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)