BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0234.p
         (214 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311121|ref|YP_003775213.1| G:T/U mismatch-specific DNA gly...   248   3e-67

>gi|300311121|ref|YP_003775213.1| G:T/U mismatch-specific DNA
           glycosylase [Herbaspirillum seropedicae SmR1]
          Length = 184

 Score =  248 bits (633), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 120/155 (77%), Positives = 135/155 (87%)

Query: 42  LLASFAPVVAPDTRILILGSLPGTASLAIRQYYGHPRNAFWRLVGEVIGVDLYAMDYAAR 101
           +LASF PVVA DTR LILGSLPG ASL +RQYYGHPRNAFW+LVGEV+G DLYAMDY  R
Sbjct: 1   MLASFPPVVARDTRTLILGSLPGVASLQMRQYYGHPRNAFWKLVGEVLGADLYAMDYPTR 60

Query: 102 LATLLQHRIGLWDVIAQARRIGSLDSEIRDHSGNDLLTLIAGLPALETIAFNGGTAGKIG 161
           L TLL HR+GLWDVIAQARRIGSLDS+IRDHS NDL TL+A LPALETIAFNGGTAGKIG
Sbjct: 61  LQTLLAHRVGLWDVIAQARRIGSLDSDIRDHSQNDLQTLLAQLPALETIAFNGGTAGKIG 120

Query: 162 IKALGAKAENYRVVVLPSSSPAHAALAYEDKRARW 196
           ++ALG +A  YR+++LPSSSPA+AAL+Y  K A W
Sbjct: 121 LQALGEQAGCYRILLLPSSSPAYAALSYAQKLASW 155


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 626,044
Number of extensions: 23956
Number of successful extensions: 110
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 133
Effective length of database: 1,236,335
Effective search space: 164432555
Effective search space used: 164432555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)