BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0229.p
         (183 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311125|ref|YP_003775217.1| GNAT family acetyltransferase [...   241   3e-65

>gi|300311125|ref|YP_003775217.1| GNAT family acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 196

 Score =  241 bits (615), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 115/170 (67%), Positives = 134/170 (78%)

Query: 1   LRRWRAEDREALAAINADPVAMQHFPKCLTRAESNALADKIEEHFVQHGFGPWALEIPGV 60
           LRRWRA DR  +AAINAD   MQHFP  L+R ES+ L D+IE HF QHGFG WALEIPGV
Sbjct: 19  LRRWRASDRAPMAAINADAQVMQHFPAPLSRQESDVLIDRIEAHFAQHGFGAWALEIPGV 78

Query: 61  SEMAGVVGLMHVGFEAHFTPAIEIGWRLAPALWGRGYVTEAARCALDFGFLRLALPRIVA 120
           +E AG+VGLM V F A FTPA+EIGWRLAPA W +GY +EAARCAL +GF  L L +IV+
Sbjct: 79  TEFAGLVGLMRVAFAAPFTPAVEIGWRLAPACWDQGYASEAARCALRYGFETLELAQIVS 138

Query: 121 FTVPANTRSLGVMQRLGMSSEMKDDFLHPRLPAGHALRLHRLYQIHQRTW 170
           FTVP N RSL VMQRLGM  ++++DFLHPRLP GH LRLHRLY+I ++ W
Sbjct: 139 FTVPENQRSLAVMQRLGMQCDVREDFLHPRLPPGHRLRLHRLYRIERQQW 188


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.139    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 666,953
Number of extensions: 28803
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 103
Effective length of database: 1,241,070
Effective search space: 127830210
Effective search space used: 127830210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 127 (53.5 bits)