BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0226.p
         (511 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311128|ref|YP_003775220.1| outer membrane protein [Herbasp...   849   0.0  

>gi|300311128|ref|YP_003775220.1| outer membrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 547

 Score =  849 bits (2194), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/494 (83%), Positives = 461/494 (93%), Gaps = 3/494 (0%)

Query: 15  LDAPPQIRLGADPAGPSATDYRLPGLPADTPPPSAQDEILLLLRQSDPDFSGNQIVLPQI 74
           LD+PPQIRLGADP G +  D++LP LP ++   S QDEIL LLRQ+DP+FSGN IVLPQI
Sbjct: 52  LDSPPQIRLGADPGGAAVGDFKLPALPGESAMGSPQDEILQLLRQADPEFSGNAIVLPQI 111

Query: 75  SIVTEGETVPDLSLRSVLDLALNNSYSYAATSAQAEQARYASKATAGQLGPTLDLRAQKG 134
           S+V EG  V DL+L  VLDLA+NNSYSYAATSAQA+QARYA++ATAGQ+GPTLD+RAQKG
Sbjct: 112 SVVPEGAPVNDLTLSQVLDLAVNNSYSYAATSAQADQARYAARATAGQMGPTLDVRAQKG 171

Query: 135 NEYSSPSSVIDPNTGLIQRASYHKRWDVTLIGRQPIFAPGSYYDYRKSSSLADAADLRRD 194
            EYSSPSSVIDPNTGL++RAS HKRWDVT+IGRQP+FAPGSY+DYRK+SSLADAADLRR+
Sbjct: 172 QEYSSPSSVIDPNTGLVRRASDHKRWDVTVIGRQPVFAPGSYFDYRKASSLADAADLRRE 231

Query: 195 DARETLYYNAIKAYYDVMRAYATLSFSRSYAQRMGALLDYMSKRLEGGGASRIDFERVRG 254
           DARETLYY AIK+YYDVMRAYATLSFSRSYAQRM ALL+YM KRLEGGGASRIDFERVRG
Sbjct: 232 DARETLYYTAIKSYYDVMRAYATLSFSRSYAQRMNALLEYMRKRLEGGGASRIDFERVRG 291

Query: 255 RSLTAQSAVAEAEGALESAMVSLNQITGRKIEQIEVPDHMMPTVPDTSKLALQDVYETNP 314
           RSLTAQ+AVAEAEGALESAMVSLNQITGRKIEQ+EVPDHMMP VPDTSKLAL+D+Y+TNP
Sbjct: 292 RSLTAQAAVAEAEGALESAMVSLNQITGRKIEQLEVPDHMMPPVPDTSKLALKDIYDTNP 351

Query: 315 GVRAARRDVDAANQELKSARAKFSPTLALEWTQTKTRGAGGAIDTTD---NTLQLTTDRR 371
           GVRAAR+DV+AANQELKSARAKFSPTLA+E+TQTKTRGAGGAIDTT+   N+LQL+TDRR
Sbjct: 352 GVRAARQDVEAANQELKSARAKFSPTLAVEFTQTKTRGAGGAIDTTNPTANSLQLSTDRR 411

Query: 372 LMMVVSMNLLNGGSDMYYSKQAGAKYVEKSNTALDLERKLREQIEINYRTLGAVRKRMEI 431
           LM+V++MNLLNGGSD+YYSKQAGAKYVEKSNT LDLERKLREQIEINYRTLGAVRKRM+I
Sbjct: 412 LMLVMTMNLLNGGSDVYYSKQAGAKYVEKSNTVLDLERKLREQIEINYRTLGAVRKRMDI 471

Query: 432 SRQAYLTNANVADVFLEQLSTGSKQLLDVLDAYQQAYQARMDFANLLFQQADISYQILRN 491
           SRQAYLTNANVADVFL+QLS GSKQL+DVLDAYQQAYQAR+DF+NLLFQQADISYQILRN
Sbjct: 472 SRQAYLTNANVADVFLDQLSAGSKQLIDVLDAYQQAYQARVDFSNLLFQQADISYQILRN 531

Query: 492 TGRASALETLPTRA 505
           TGRASA    PT+A
Sbjct: 532 TGRASAAVLTPTQA 545


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.129    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,409,194
Number of extensions: 53678
Number of successful extensions: 177
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 2
Length of query: 511
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 422
Effective length of database: 1,198,455
Effective search space: 505748010
Effective search space used: 505748010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 133 (55.8 bits)