BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0222.p
         (473 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311131|ref|YP_003775223.1| hypothetical protein Hsero_1805...   711   0.0  
gi|300312348|ref|YP_003776440.1| centriolin protein [Herbaspiril...    71   2e-13

>gi|300311131|ref|YP_003775223.1| hypothetical protein Hsero_1805
           [Herbaspirillum seropedicae SmR1]
          Length = 553

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/370 (96%), Positives = 365/370 (98%)

Query: 1   MKNLRQFYALAAIPTLLLLLGAFLFRGFVGHAIQINPFLNLFIIAVAVFGIALIFYNLYR 60
           MKNLRQFYALAAIPTLLLLLGAFLFRGFV HAIQINPFLNLFIIAVAVFGIALI YNL+R
Sbjct: 1   MKNLRQFYALAAIPTLLLLLGAFLFRGFVLHAIQINPFLNLFIIAVAVFGIALIGYNLWR 60

Query: 61  VNWEYDKLIQFYDRTKAGESMESLVKAPEFEGTEIGQVLVSVASTKGRLTSRIEQETIEG 120
           VNWE+ KL+QFY+RTKAGESMESLVKAPEFEGTEIGQVLVSVASTKGRLTSRIEQETIEG
Sbjct: 61  VNWEHAKLMQFYERTKAGESMESLVKAPEFEGTEIGQVLVSVASTKGRLTSRIEQETIEG 120

Query: 121 SLHDLRAHLEAKTEFPQFLTGFMIALGLLGTFIGLLETLVSTAALIDGFGKASTAGDMDA 180
           SLHDLRAHL+AKTEFPQFLTGFMIALGLLGTFIGLLETLVSTAALIDGFGKAS+ GDMDA
Sbjct: 121 SLHDLRAHLDAKTEFPQFLTGFMIALGLLGTFIGLLETLVSTAALIDGFGKASSGGDMDA 180

Query: 181 SFMHLVADLQKPLASMGTAFSASMFGLIGSLALGLTLTPLRAASKKLVTRARECISDMVQ 240
           SFMHLVADLQKPLASMGTAFSASMFGLIGSLALGLTLTPLRAASKKLV+RARECISDMVQ
Sbjct: 181 SFMHLVADLQKPLASMGTAFSASMFGLIGSLALGLTLTPLRAASKKLVSRARECISDMVQ 240

Query: 241 HVVHDMSGPAATQRQGVSETFLAEFLQDLMVLQRESIMAARNSSEASLQAGIKLEGLNDR 300
           HVVHDMSGPAATQRQGVSE+FLAEFLQDLMVLQRESIMAARNSSEASLQAGIKLEGLNDR
Sbjct: 241 HVVHDMSGPAATQRQGVSESFLAEFLQDLMVLQRESIMAARNSSEASLQAGIKLEGLNDR 300

Query: 301 LNNIVQLFNDSMEESRSLRQLVAFGPRMHETAQQTLEEIRNVGQLINTKITSARDLSDSL 360
           LNNIVQLFNDSMEESRSLRQLVAFGPRMHETAQQTLEEIRNVGQLINTKITSARDLSDSL
Sbjct: 301 LNNIVQLFNDSMEESRSLRQLVAFGPRMHETAQQTLEEIRNVGQLINTKITSARDLSDSL 360

Query: 361 SSLEERLSVT 370
           SSLEERLSV 
Sbjct: 361 SSLEERLSVN 370


>gi|300312348|ref|YP_003776440.1| centriolin protein [Herbaspirillum
           seropedicae SmR1]
          Length = 517

 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 99/215 (46%), Gaps = 19/215 (8%)

Query: 28  FVGHAIQINPFLNLFIIAVAVFGIALIFYNLYRVNWEYDKLIQFYDRTKA--------GE 79
            + HA   NPF  + ++ + V G  L  +   R+  E  ++     R K         G 
Sbjct: 44  LIAHAA--NPFFVIVLVVITVLGQVLTIWQAKRILAEGRQVDLLSGRVKTFARDGRTEGA 101

Query: 80  SMES-LVKAPEFEGTEIGQVLVSVASTKGRLTSRIEQETIEGSLHDLRAHLEAKTEFPQF 138
           ++E  LVK  E    +I ++L  + +  GR T R ++  ++         L+ +T  PQ+
Sbjct: 102 ALEQELVK--EDRNFDIDRLLRQLKNADGR-TIRFDRTQLQHQFDGFAGDLQRRTLLPQY 158

Query: 139 LTGFMIALGLLGTFIGLLETLVSTAALIDGFGKASTAG--DMDASFMHLVADLQKPLASM 196
           +   +I LGL GTF+GL+ TL   A LI  F    T G  DM   F   ++    PLA M
Sbjct: 159 IANTLIGLGLFGTFLGLIVTLKEVALLIGMFSSIGTEGGSDMMGKFFERMSG---PLAGM 215

Query: 197 GTAFSASMFGLIGSLALGLTLTPLRAASKKLVTRA 231
           G AF AS+ GL GS+   + L   +   + +  RA
Sbjct: 216 GDAFVASLLGLGGSIVNNVQLLACKKLQRLVSARA 250


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.133    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,069,577
Number of extensions: 38149
Number of successful extensions: 176
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 2
Length of query: 473
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 384
Effective length of database: 1,198,455
Effective search space: 460206720
Effective search space used: 460206720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)