BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0218.p (567 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311132|ref|YP_003775224.1| ABC-type bacteriocin/lantibioti... 971 0.0 gi|300312350|ref|YP_003776442.1| bacteriocin/lantibiotic exporte... 215 8e-57 gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclol... 170 3e-43 gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPas... 153 3e-38 gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPas... 112 1e-25 >gi|300311132|ref|YP_003775224.1| ABC-type bacteriocin/lantibiotic ATPase/permease fusion exporter protein [Herbaspirillum seropedicae SmR1] Length = 567 Score = 971 bits (2511), Expect = 0.0, Method: Compositional matrix adjust. Identities = 517/567 (91%), Positives = 543/567 (95%) Query: 1 MNASEQVHIDQPQVRTDLRADPTYLTLLRAYGSRFVEIIVAGILVNLLGLLMPLYSRLIY 60 MNASEQVHIDQPQV DLRADP+YL+LLRAYGSRFVEIIVAGI+VN+LGLLMPLYSRLIY Sbjct: 1 MNASEQVHIDQPQVLQDLRADPSYLSLLRAYGSRFVEIIVAGIVVNVLGLLMPLYSRLIY 60 Query: 61 DKVLGNHIPETLWALTLGMLLFIGLELVLRIIRVYYTEQLAGRLDGEFDEVSARRLLTAK 120 DKV+GNHIPETLWALTLGMLLF+ LELVLRIIRVYYTEQLAGRLD EFDEVSARR+LTA+ Sbjct: 61 DKVIGNHIPETLWALTLGMLLFVALELVLRIIRVYYTEQLAGRLDSEFDEVSARRMLTAR 120 Query: 121 VQAPVGVVLARYRDLSAARDLLSSNYMLLLVDLPFLALYLVVLGLIGGHMVWVLLVGGAL 180 VQAPVGVVLARYRDLSAARDL+SSNYMLLLVDLPFL LYLVVLGLIGGHMVWVLLVGG L Sbjct: 121 VQAPVGVVLARYRDLSAARDLMSSNYMLLLVDLPFLLLYLVVLGLIGGHMVWVLLVGGGL 180 Query: 181 LVGMQLLLKVPANDYAHAAMKAGTGKVDKLASIVYGMETLKTTPLQDRLMRAFLADAGAN 240 LVG+QLLLKVP NDYA++AMKAGTGKVDKLASIVYGMETLKT+PLQ RL+RAFLADA AN Sbjct: 181 LVGLQLLLKVPGNDYANSAMKAGTGKVDKLASIVYGMETLKTSPLQHRLLRAFLADASAN 240 Query: 241 AVAQAKSRFWMNTSYAISTVGYTFIAVATLVVGVYLVEDNLLTVGALIACSLLISRATTV 300 AVAQAKSRFWMNTSYAIS+VGYT I+VATLVVGVYLVEDNLLTVGALIACSLLISRA TV Sbjct: 241 AVAQAKSRFWMNTSYAISSVGYTLISVATLVVGVYLVEDNLLTVGALIACSLLISRAATV 300 Query: 301 LSSLAALLGRIEMFRRARAEFDQLFEEQKETPTADVLRQEMRGLIQVGNLLLHLDQKENA 360 LSSLAA LGRIEMFRRARAEFDQLFEE ++ PTADVLRQ+MRGLIQVGNLLLHLD+KE Sbjct: 301 LSSLAAFLGRIEMFRRARAEFDQLFEEPEQGPTADVLRQDMRGLIQVGNLLLHLDKKETP 360 Query: 361 TLKNISLTIQPGEKVGLVGRSGSGKSTLLRALAGLHQPDEGHVLIDGVAVTAYAPEVRMR 420 TL+NISLTIQPGEKVG+VGRSGSGKSTLLR LAGLHQ +EGHVLIDGVAVTAYA EVRMR Sbjct: 361 TLRNISLTIQPGEKVGIVGRSGSGKSTLLRTLAGLHQAEEGHVLIDGVAVTAYAEEVRMR 420 Query: 421 CIGFKPQEPFLFDGTVAANIFVGDRVPGQVYEAALAVSSLDDLIARGELRLDQAIKAPGN 480 CIGFKPQEPFLFDGTVAANIFVGDRVPGQVYEAALAVSSLDDLIARGELRLDQ IKAPGN Sbjct: 421 CIGFKPQEPFLFDGTVAANIFVGDRVPGQVYEAALAVSSLDDLIARGELRLDQLIKAPGN 480 Query: 481 LSGGQRQMVALARVIACTPRILLLDEPTTGVDQQTEARIIERLAAYAGPRTLVVATHSPA 540 LSGGQRQMVALARVIACTPRILLLDEPTTG+DQQTEARIIERL YAG RTLVVATHSPA Sbjct: 481 LSGGQRQMVALARVIACTPRILLLDEPTTGIDQQTEARIIERLVGYAGGRTLVVATHSPA 540 Query: 541 LLRHVDRIIVIDGGRIVADGPRDQILQ 567 LLRH+DRI+VIDGGRIVADGPR QILQ Sbjct: 541 LLRHMDRIVVIDGGRIVADGPRAQILQ 567 >gi|300312350|ref|YP_003776442.1| bacteriocin/lantibiotic exporter/double-glycine peptidase domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 730 Score = 215 bits (547), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 171/561 (30%), Positives = 282/561 (50%), Gaps = 28/561 (4%) Query: 24 YLTLLRAYGSRFVEIIVAGILVNLLGLLMPLYSRLIYDKVLGNHIPETLWALTLGMLLFI 83 +L + + +EI+VA ++++++ L ++S +YD+V+ H TL L +G+ L I Sbjct: 163 FLDAIGEFRPVLIEIVVASVVMSIIALGASIFSMQVYDRVIPTHGVATLIVLAIGVGLAI 222 Query: 84 GLELVLRIIRVYYTEQLAGRLDGEFDEVSARRLLTAKV-QAP--VGVVLARYRDLSAARD 140 EL ++ R + +++ LD + + RLL +V Q P VG + + R R Sbjct: 223 LFELGMKFARSHIMDKVVSGLDAKLSQALYERLLAVRVDQLPGSVGSLAGQLRGYEQIRS 282 Query: 141 LLSSNYMLLLVDLPFLALYLVVLGLIGG-HMVWVLLVGGALLVGMQLLLKVPANDYAHAA 199 +S + LVDLP L+++V+ LI M V V G + + + L A + Sbjct: 283 FYTSQTLFTLVDLPLGLLFVLVIALIASPWMALVPTVFGVVAILIGYLSNRKVARLADKS 342 Query: 200 MKAGTGKVDKLASIVYGMETLKTTPLQDRLMRAFLADAGANAVAQAKSRFWMNTSYAIST 259 A K L V G+ET+K+ + + ++ + + + R + + I+ Sbjct: 343 AAASNLKTGLLVETVEGVETIKSGSGGWKFLSRWIDVSAESIRSDMAMRAIGDHAGYIAA 402 Query: 260 VGYTFIAVATLVVGVYLVEDNLLTVGALIACSLLISRATTVLSSLAALLGRIEMFRRARA 319 T+++G +LV + +T+GALIACS+L R ++ + L+ + + A Sbjct: 403 TLQQLSYSTTVIIGAFLVINGQITMGALIACSILGGRILAPVAMIPGLMVQRAHTKATLA 462 Query: 320 EFDQLFEEQKETP-----TADVLRQEMR----GLIQVGNLL--LHLDQKENATLKNISLT 368 ++++ Q + T D LR E R G++L + +DQ LT Sbjct: 463 GLEKIYALQTDQGSERQLTPDNLRGEFRIEEAKFTYAGSMLNAMTIDQ----------LT 512 Query: 369 IQPGEKVGLVGRSGSGKSTLLRALAGLHQPDEGHVLIDGVAVTAYAPEVRMRCIGFKPQE 428 I GE+V ++G G+GKST+LR L+GL++P +G +L+DG+ + + IG+ Q+ Sbjct: 513 INAGERVAVLGPIGAGKSTILRLLSGLYRPQQGRILLDGLDMANINRLTLNQHIGYLQQD 572 Query: 429 PFLFDGTVAANIFVGDRVPGQ-VYEAALAVSSLDDLIARGELRLDQAIKAPG-NLSGGQR 486 LF G++ N+ +G PG V + + L L++ LD I+ G LSGGQ+ Sbjct: 573 HRLFVGSLRENLLIGLPDPGDDVLRQVMERTGLLRLVSSHPKGLDLPIQEGGRGLSGGQK 632 Query: 487 QMVALARVIACTPRILLLDEPTTGVDQQTEARIIERL-AAYAGPRTLVVATHSPALLRHV 545 Q+VA R++ C P + LLDEPT +D+ E + L +G RTLVV TH PA L V Sbjct: 633 QLVAFTRLLLCQPNVFLLDEPTASMDEDLERHCLNVLNQEISGGRTLVVVTHKPAFLPMV 692 Query: 546 DRIIVIDGGRIVADGPRDQIL 566 DR+IV+ G RIV DGPRD IL Sbjct: 693 DRVIVVVGNRIVLDGPRDVIL 713 >gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclolysin-type) secretion ABC transporter protein [Herbaspirillum seropedicae SmR1] Length = 726 Score = 170 bits (430), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 146/552 (26%), Positives = 261/552 (47%), Gaps = 26/552 (4%) Query: 31 YGSRFVEIIVAGILVNLLGLLMPLYSRLIYDKVLGNHIPETLWALTLGMLLFIGLELVLR 90 Y E+++ +++ L+GL+ P++ +++ DKVL NH TL + +G++ E VL Sbjct: 159 YRKTLAEVLLISLVLQLIGLITPMFFQVVMDKVLVNHAMMTLNVIAVGLIAATVFEAVLT 218 Query: 91 IIRVYYTEQLAGRLDGEFDEVSARRLLTAKVQAPV--------GVVLARYRDLSAARDLL 142 IR + ++D E RL + + P+ G +AR R+L R L Sbjct: 219 GIRTAIFANASSKIDVEL----GSRLFSHLLSLPLSYFQVRRAGDSIARVRELENIRSFL 274 Query: 143 SSNYMLLLVDLPFLALYLVVLGLIGGHMVWVLLVGGALLVGMQL----LLKVPANDYAHA 198 + N M L++D+ F ++L V+ + ++L + V + L LL+ ND + Sbjct: 275 TGNAMTLVLDIMFSFVFLGVMLWYSVSLSLIVLASIPVYVLLSLVFTPLLRERLNDKFNK 334 Query: 199 AMKAGTGKVDKLASIVYGMETLKTTPLQDRLMRAFLADAGANAVAQ-AKSRFWMNTSYAI 257 + + + V+ L GM+T+K ++ R + + A A + + S A+ Sbjct: 335 SAENQSFLVETLT----GMDTVKAMAVEPRWQQKWDKQLAAYVAAGLTTTNISLLASGAV 390 Query: 258 STVGYTFIAVATLVVGVYLVEDNLLTVGALIACSLLISRATTVLSSLAALLGRIEMFRRA 317 V + V + +G LV N ++VG L+A ++L + + + LA L + + Sbjct: 391 GLVS-KLVTVGIMWLGALLVVKNEMSVGELVAFNMLAGQVASPILRLAQLWNDFQQIGIS 449 Query: 318 RAEFDQLFEEQKETPTADVLRQEMRGLIQVGNLLLHLDQKENATLKNISLTIQPGEKVGL 377 + + + + E + G I + + ++ +SL I+PGE +G+ Sbjct: 450 MSRLADVLDARTEVAGNRTRLPRVNGAISFDLVSFRYRPETPEVIRGLSLQIRPGEVIGI 509 Query: 378 VGRSGSGKSTLLRALAGLHQPDEGHVLIDGVAVTAYAPEVRMRCIGFKPQEPFLFDGTVA 437 VGRSGSGKSTL + + L+ + G + +DG + + IG QE LF ++ Sbjct: 510 VGRSGSGKSTLAKLVQRLYICETGRISVDGQDIAIIDTASLRQQIGVVLQENTLFSRSIR 569 Query: 438 ANIFVGD-RVP-GQVYEAALAVSSLDDLIARGELRLDQAIKAPGN-LSGGQRQMVALARV 494 NI + D P Q+ EAA ++ D I D + G+ LSGGQRQ +A+AR Sbjct: 570 DNIALADPSTPIEQIIEAA-KLAGAHDFICELPEGYDTMVGEQGSGLSGGQRQRIAIARA 628 Query: 495 IACTPRILLLDEPTTGVDQQTEARIIERLAAYAGPRTLVVATHSPALLRHVDRIIVIDGG 554 + P IL+ DE T+ +D ++E I + + RT+++ H + +R DRIIV++ G Sbjct: 629 LITNPGILIFDEATSALDYESEKIIQDNMRQICAGRTVLIIAHRLSAVRDADRIIVMERG 688 Query: 555 RIVADGPRDQIL 566 R+ G D+++ Sbjct: 689 RVAESGSHDELI 700 >gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 758 Score = 153 bits (387), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 119/386 (30%), Positives = 192/386 (49%), Gaps = 28/386 (7%) Query: 200 MKAGTGKVDK--------LASIVYGMETLKTTPLQDRLMRAFLADAGANAVAQAKSRFWM 251 ++ G K+D+ LA + G+ +K + R + F N + + + Sbjct: 350 LRHGFEKIDRIWSEVTNVLADTIPGIRVVKAFAQEKREVARFREANRHNLMVNDR----V 405 Query: 252 NTSYAISTVGYTFIAVATLVV----GVYLVEDNLLTVGALIACSLLISRATTVLSSLAAL 307 N +++ T TF+ L+V G++ V N +TVG L A ISR T L S++ + Sbjct: 406 NKIWSLFTPTVTFLTEVGLLVVWVFGIWQVSSNQITVGVLTAFLAYISRFYTRLDSMSRI 465 Query: 308 LGRIEMFRRARAEFDQLFE-----EQKETPTADVLRQEMRGLIQVGNLLLHLDQKENATL 362 + + ++A A ++F+ P V ++++G I+V N+ + A + Sbjct: 466 ---VSVTQKAAAGAKRIFDILDHVSSVPEPANPVHLEKVQGAIEVRNIGFRYGNR--AVI 520 Query: 363 KNISLTIQPGEKVGLVGRSGSGKSTLLRALAGLHQPDEGHVLIDGVAVTAYAPEVRMRCI 422 +N+SL+I PGE +GLVG SGSGKST++ + + EG + IDGV + + R I Sbjct: 521 RNMSLSIAPGEMIGLVGHSGSGKSTMVNLICRFYDVSEGAIRIDGVDIRSLPISEYRRNI 580 Query: 423 GFKPQEPFLFDGTVAANIFVGD-RVPGQVYEAALAVSSLDDLIARGELRLDQAIKAPGN- 480 G QEPFLF GT+A NI G + AA + + I R D + G Sbjct: 581 GLVLQEPFLFFGTIAENIAYGKPEATREEIIAAARAAHAHEFILRLPQGYDSLVGERGQA 640 Query: 481 LSGGQRQMVALARVIACTPRILLLDEPTTGVDQQTEARIIERLAAYAGPRTLVVATHSPA 540 LSGG+RQ +++AR + PRIL+LDE T+ VD TE I + L RT + H + Sbjct: 641 LSGGERQRISIARALLIDPRILILDEATSSVDTTTEKEIQKALDNLVQGRTTIAIAHRLS 700 Query: 541 LLRHVDRIIVIDGGRIVADGPRDQIL 566 LR DR++V+D G++V G ++++ Sbjct: 701 TLRKADRLVVLDRGQVVEVGNHEELM 726 >gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 578 Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 99/309 (32%), Positives = 148/309 (47%), Gaps = 5/309 (1%) Query: 263 TFIAVATLVVGVYLVEDN-LLTVGALIACSLLISRATTVLSSLAALLGRIEMFRRARAEF 321 T AVA ++V + N +TVG ++ + T L LA + G ++ A E Sbjct: 252 TATAVAVVIVMALIQSGNGQITVGGFVSFITAMLMLLTPLKQLAEINGPLQRGMAAAEEV 311 Query: 322 DQLFEEQKETPTADVLRQEMRGLIQVGNLLLHLDQKENATLKNISLTIQPGEKVGLVGRS 381 +L ++ E T + L G + + E LKNI+L ++ GE + VG S Sbjct: 312 YKLIDKTTERITGEALAGRATGQLDFVEVGFAYPGHEQLALKNINLHVEAGETIAFVGMS 371 Query: 382 GSGKSTLLRALAGLHQPDEGHVLIDGVAV-TAYAPEVRMRCIGFKPQEPFLFDGTVAANI 440 G GKSTL+ + G + G + +DG + T P +R + I Q LFD T+AANI Sbjct: 372 GGGKSTLVSLIPGFYSCSSGEIRLDGRDIETISLPSLRQQ-IAMVNQNTVLFDDTLAANI 430 Query: 441 FVGDRVPG-QVYEAALAVSSLDDLIARGELRLDQAIKAPGN-LSGGQRQMVALARVIACT 498 GD P EAA+ + L D++A L + G+ LSGGQRQ VA+AR I Sbjct: 431 AYGDANPDPARVEAAVEAAHLTDVVAGLPEGLQTRLGDNGSRLSGGQRQRVAIARAIYKD 490 Query: 499 PRILLLDEPTTGVDQQTEARIIERLAAYAGPRTLVVATHSPALLRHVDRIIVIDGGRIVA 558 IL+LDE T+ +D ++E + L RT V H + + DRI+V+ G+I Sbjct: 491 APILILDEATSALDTESERAVQAALDRLMQGRTTFVIAHRLSTIERADRIVVLAHGQIAE 550 Query: 559 DGPRDQILQ 567 G +L+ Sbjct: 551 IGTHQALLE 559 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.140 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,713,090 Number of extensions: 72710 Number of successful extensions: 679 Number of sequences better than 1.0e-08: 131 Number of HSP's gapped: 496 Number of HSP's successfully gapped: 147 Length of query: 567 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 477 Effective length of database: 1,193,720 Effective search space: 569404440 Effective search space used: 569404440 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 133 (55.8 bits)