BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0213.p (429 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311134|ref|YP_003775226.1| transcription regulator protein... 706 0.0 gi|300312337|ref|YP_003776429.1| transcription regulator protein... 292 3e-80 gi|300312133|ref|YP_003776225.1| transcription regulator protein... 291 5e-80 gi|300313928|ref|YP_003778020.1| GntR family transcription regul... 283 2e-77 gi|300311016|ref|YP_003775108.1| MocR family transcription regul... 124 2e-29 >gi|300311134|ref|YP_003775226.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 500 Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/414 (85%), Positives = 374/414 (90%), Gaps = 8/414 (1%) Query: 1 MTNT-----VKHLRSIPAKTVPADAALPGWPMLVRESGESLVDQIVRGVRARIDDKLLRG 55 MTNT + P T P D+ PGWP+L+RESG+SLV+QIVRG+RARIDDKLLR Sbjct: 1 MTNTASQHPTRQNEPHPRGTGP-DSGQPGWPLLLRESGDSLVEQIVRGIRARIDDKLLRS 59 Query: 56 GARMPSIRQFADAHEISRFTVVEAFDRLVAQGYLESRRGSGFFVKERVAVANGYGNLAAQ 115 G RMPSIRQFAD ++ISRFTVVEA+DRLVAQGYLESRRGSGF+VKER + YG AAQ Sbjct: 60 GMRMPSIRQFADTNQISRFTVVEAYDRLVAQGYLESRRGSGFYVKERAPLGGSYG--AAQ 117 Query: 116 AEAVAEAERGLDVVWLVRNMFRQMPPHKMPGGGLLPPDWLDGELIANALRAISRDNPSLL 175 AE E RGLDVVWLVRNMFRQMPP KMPGGGLLPPDWLDGELIANALRA+SRDNP LL Sbjct: 118 AELDTEPGRGLDVVWLVRNMFRQMPPAKMPGGGLLPPDWLDGELIANALRAVSRDNPQLL 177 Query: 176 LGYGTPLGFLPLRQQLQLKLAELEIAAAPDQFVLTTGVTQAIDTVARHFLRPGDVIFVDD 235 LGYGTP GFLPLRQQLQLKLAELEIAAAP+Q VLTTGVTQ +DTVARHFLRPGDVIFVDD Sbjct: 178 LGYGTPQGFLPLRQQLQLKLAELEIAAAPEQIVLTTGVTQGLDTVARHFLRPGDVIFVDD 237 Query: 236 PAWFLMFGSFAALGAKIVGIPRLADGPDIAQLRELAEIHKPKLYVINSVLHNPTSTSLSA 295 PAWFLMFGSFAALGAK+VGIPRL DGPDIA+LRELA +HKPKLYVINSVLHNPTSTSLSA Sbjct: 238 PAWFLMFGSFAALGAKVVGIPRLGDGPDIARLRELAAVHKPKLYVINSVLHNPTSTSLSA 297 Query: 296 AKAFQVLRIAEEHDFIIVEDDIYCDMHPGSAVQAATRIAALDQLQRVIYLGGFSKTLSAN 355 AKAFQVLRIAEEHDF+IVEDDIYCDMHPGSAVQ ATRIAALDQLQRVIYLGGFSKTLSAN Sbjct: 298 AKAFQVLRIAEEHDFVIVEDDIYCDMHPGSAVQPATRIAALDQLQRVIYLGGFSKTLSAN 357 Query: 356 LRVGFIATSAELARSLADRKLLSTLTTGEIGERVAYRVLSEGHYRKHAERLRAR 409 LRVG+IATSAELARSLADRKLLSTLTTGEIGERVAY+VLSEGHYRKHAER+RAR Sbjct: 358 LRVGYIATSAELARSLADRKLLSTLTTGEIGERVAYKVLSEGHYRKHAERVRAR 411 >gi|300312337|ref|YP_003776429.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 469 Score = 292 bits (748), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 164/396 (41%), Positives = 231/396 (58%), Gaps = 25/396 (6%) Query: 31 ESGESLVDQIVRGVRARIDDKLLRGGARMPSIRQFADAHEISRFTVVEAFDRLVAQGYLE 90 E+ +L +V+ +R +I + + G+R+PSIR+ A H ++ T+V FD L A G E Sbjct: 3 EASTTLTSTLVQLIRRQIAEGVYAPGSRLPSIREMAARHGCAKNTIVNVFDELTALGLAE 62 Query: 91 SRRGSGFFVKERVAVA------NGYGNLAAQAEAVAEAERGLDVVWLVRNMFRQMPPHKM 144 RRG+GFFV VA + GNL+ R +DVVWL+R + P Sbjct: 63 PRRGAGFFV----CVAPPRPKEDEEGNLS----------RAMDVVWLMREQLKHDPGQLR 108 Query: 145 PGGGLLPPDWLDGELIANALRAISRDNPSLLLGYGTPLGFLPLRQQLQLKLAELEIAAAP 204 G G P +WL + + + R L GYG+ G+LPLRQ L KLA+ I A Sbjct: 109 LGDGFPPVEWLHDVRLDKFHQKVVRTGIGALFGYGSRFGYLPLRQHLVHKLAQHGIEAGT 168 Query: 205 DQFVLTTGVTQAIDTVARHFLRPGDVIFVDDPAWFLMFGSFAALGAKIVGIPRLADGPDI 264 Q VLT G QA+D V RHF+RPGD + VD+P +++++G GA+I+GIPRL DGPD+ Sbjct: 169 GQIVLTHGANQALDIVIRHFIRPGDRVLVDEPGYYMLYGKLKLSGARIIGIPRLPDGPDV 228 Query: 265 AQL-RELAEIHKPKLYVINSVLHNPTSTSLSAAKAFQVLRIAEEHDFIIVEDDIYCDMHP 323 A L REL KP L+ S+ HNPT++ S KA ++L++A+ + IIVE+D + D P Sbjct: 229 AVLERELHRPGKPPLFFTQSLAHNPTASDTSPHKAHRILQLADRYQAIIVENDAFADFKP 288 Query: 324 GSAVQAATRIAALDQLQRVIYLGGFSKTLSANLRVGFIATSAELARSLADRKLLSTLTTG 383 + A RIA LDQL+R +Y+G FSK++SA LRVGFIA +LA LAD K+L +++ Sbjct: 289 AT----APRIATLDQLRRTVYVGSFSKSVSAALRVGFIACHRDLASDLADIKMLVHMSSS 344 Query: 384 EIGERVAYRVLSEGHYRKHAERLRARARRCARQGHA 419 E ER +LS+GH+ +H RLR R + Q A Sbjct: 345 EYCERTLDVILSDGHFSRHTARLRERLAQATEQARA 380 >gi|300312133|ref|YP_003776225.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 491 Score = 291 bits (746), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 164/381 (43%), Positives = 224/381 (58%), Gaps = 10/381 (2%) Query: 30 RESGESLVDQIVRGVRARIDDKLLRGGARMPSIRQFADAHEISRFTVVEAFDRLVAQGYL 89 + S LVD+I V + + L G ++PS+R A++ ++SR TV A+++LVA G++ Sbjct: 26 KHSARLLVDRIFTAVLEGVRTRRLAHGDKLPSLRVVAESAQVSRDTVARAYEKLVAHGHV 85 Query: 90 ESRRGSGFFVKERVAVANGYGNLAAQAEAVAEAERGLDVVWLVRNMFRQMPPHKMPGGGL 149 +R G+GFFV+ VAN A +R LD L+ H+ G G Sbjct: 86 YTRPGAGFFVRVDNQVANAQTQTAPAPLLTNWRQRLLDPRTLL---------HRGLGSGD 136 Query: 150 LPPDWLDGELIANALRAISRDNPSLLLGYGTPLGFLPLRQQLQLKLAELEIAAAPDQFVL 209 LP +W++ +A ALRA+SR N + GYG G+LPLRQQLQ KLA++ + P Q + Sbjct: 137 LPAEWINVPQLAAALRAVSRSNINWAAGYGDAQGYLPLRQQLQRKLADIGVDVTPPQVLT 196 Query: 210 TTGVTQAIDTVARHFLR-PGDVIFVDDPAWFLMFGSFAALGAKIVGIPRLADGPDIAQLR 268 T G T AI+ + +LR PG + VDDP FL+ A G IVG+ R ADGPDI L+ Sbjct: 197 TLGATDAINLIVMSYLRQPGMTVLVDDPGSFLLMERLLASGMHIVGVARDADGPDITALQ 256 Query: 269 ELAEIHKPKLYVINSVLHNPTSTSLSAAKAFQVLRIAEEHDFIIVEDDIYCDMHPGSAVQ 328 E H P Y S+LH+P T LS +AFQ+LR+AE +F IVEDD Y D+ P Sbjct: 257 NACEQHGPTFYFCQSLLHSPGYTGLSPQRAFQILRLAERFNFTIVEDDTYGDLAPAHRSP 316 Query: 329 AATRIAALDQLQRVIYLGGFSKTLSANLRVGFIATSAELARSLADRKLLSTLTTGEIGER 388 ATR+A+LDQLQ V+Y+G FSKTL A +R GFIA + + L KL+S + G + ER Sbjct: 317 HATRLASLDQLQHVLYVGSFSKTLGAGMRAGFIAGNPQQIEWLLLYKLVSRASNGSLAER 376 Query: 389 VAYRVLSEGHYRKHAERLRAR 409 YR+LSEG YR+H E+LR R Sbjct: 377 AIYRLLSEGGYRRHCEQLRTR 397 >gi|300313928|ref|YP_003778020.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 472 Score = 283 bits (724), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 156/381 (40%), Positives = 218/381 (57%), Gaps = 11/381 (2%) Query: 28 LVRESGESLVDQIVRGVRARIDDKLLRGGARMPSIRQFADAHEISRFTVVEAFDRLVAQG 87 L R++ LV+Q+ G+ I+ LR G R+PS+RQFA H+I TVVEA+++LVA+G Sbjct: 13 LKRKTSARLVEQVANGLAGLIETGELRSGERLPSVRQFAQHHDIGSSTVVEAYEQLVARG 72 Query: 88 YLESRRGSGFFVKERVAVANGYGNLAAQAEAVAEAERGLDVVWLVRNMFRQMPPHKMPGG 147 L++RRG+GFFV R + Q E +D WL+ MF G Sbjct: 73 MLQARRGAGFFVAARAGQS-------GQHAVFVPPEPVIDSAWLLSEMFADERVPIKAGC 125 Query: 148 GLLPPDWLDGELIANALRAISRDNPSLLLGYGTPLGFLPLRQQLQLKLAELEIAAAPDQF 207 G LP WL+ E + A R I R + +GYG P G+ PLRQ + L + +Q Sbjct: 126 GWLPGKWLNDEGLHQAERRIIRSPGAQQVGYGHPYGYAPLRQLITQFLGHWSLELGIEQV 185 Query: 208 VLTTGVTQAIDTVARHFLRPGDVIFVDDPAWFLMFGSFAALGAKIVGIPRLADGPDIAQL 267 + T G TQA+D V R +PGD + +DDP + + G ++G+PR G D L Sbjct: 186 LTTHGATQALDLVIRTMTQPGDTVLIDDPGYCNLIAMLRLAGLNVIGVPRTPGGVDTDVL 245 Query: 268 RELAEIHKPKLYVINSVLHNPTSTSLSAAKAFQVLRIAEEHDFIIVEDDIYCDMHPGSAV 327 LA H PK++ SVL NPT TS + A A +VL+ AE H F +VEDDI+ ++ G A Sbjct: 246 ETLARTHHPKMFFTTSVLQNPTGTSYTPACAMRVLQAAERHGFWVVEDDIFREL--GQAT 303 Query: 328 QAATRIAALDQLQRVIYLGGFSKTLSANLRVGFIATSAELARSLADRKLLSTLTTGEIGE 387 +AALD LQRVIY+G +SKT++ +LRVG+IA ELAR + K++ TLT EI E Sbjct: 304 DPM--LAALDGLQRVIYVGSYSKTIAPSLRVGYIACQRELARQIVHTKMVLTLTNSEINE 361 Query: 388 RVAYRVLSEGHYRKHAERLRA 408 R+ + VL+EGH+R+H + L A Sbjct: 362 RLVHNVLTEGHHRRHVQTLNA 382 >gi|300311016|ref|YP_003775108.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 480 Score = 124 bits (310), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 97/377 (25%), Positives = 176/377 (46%), Gaps = 8/377 (2%) Query: 36 LVDQIVRGVRARIDDKLLRGGARMPSIRQFADAHEISRFTVVEAFDRLVAQGYLESRRGS 95 L Q + A I D +LR G R+ S+R + H++S TVV A++ L ++G +ES+ S Sbjct: 6 LYKQFADQLAASIRDGVLRPGERIASVRIASQQHKVSVTTVVRAYELLESRGIIESQPQS 65 Query: 96 GFFVKER--VAVANGYGNLAAQAEAVAEAERGLDVVWLVRNMFRQMPPH-KMPGGGLLP- 151 G+FV+E+ + + + +DV LV + + +P G P Sbjct: 66 GYFVREQPEAPPKPALRTTSREDHPAWQESTEVDVSRLVLATLKTIQQDGTVPLGSPYPN 125 Query: 152 PDWLDGELIANALRAISRDNPSLLLGYGTPLGFLPLRQQLQLKLAELEIAAAPDQFVLTT 211 P +A I+R + P G L +Q+ + E + P++ V+T Sbjct: 126 PALFPSHRLAQYAGRIARHASQSSVFDDLPPGHPELLRQIARRYLENGLKVDPEEIVITV 185 Query: 212 GVTQAIDTVARHFLRPGDVIFVDDPAWFLMFGSFAALGAKIVGIPRLAD-GPDIAQLREL 270 G T+AI+ + RPGD I V+ P ++ M + LG + + IP G D+ L E Sbjct: 186 GATEAINLCLQAVARPGDTIAVETPTFYAMLHAIERLGMRALEIPTDPQRGIDVGALEER 245 Query: 271 AEIHKPKLYVINSVLHNPTSTSLSAAKAFQVLRIAEEHDFIIVEDDIYCDMHPGSAVQAA 330 + ++ NP + ++ +++R+AE+H ++E+ +Y +++ G+A ++ Sbjct: 246 MKTQAIAACMVMPNFQNPLGFQMPDSEKERLVRLAEQHQMPVIENAVYSELYYGNAHPSS 305 Query: 331 TRIAALDQLQRVIYLGGFSKTLSANLRVGFIATSAELARSLADRKLLSTLTTGEIGERVA 390 + D L V++ FSK+L++ R+G+ A + K L+TL T +R Sbjct: 306 LKNYDRDGL--VLHCSSFSKSLTSAYRIGW-AMPGRYRAQVEKLKFLNTLATPTAPQRAI 362 Query: 391 YRVLSEGHYRKHAERLR 407 L++G Y +H R+R Sbjct: 363 AEYLTQGGYERHLRRVR 379 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.137 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,220,934 Number of extensions: 46794 Number of successful extensions: 218 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 202 Number of HSP's successfully gapped: 10 Length of query: 429 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 341 Effective length of database: 1,203,190 Effective search space: 410287790 Effective search space used: 410287790 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)