BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0208.p
         (282 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311137|ref|YP_003775229.1| drug/metabolite transporter (DM...   499   e-142

>gi|300311137|ref|YP_003775229.1| drug/metabolite transporter (DMT)
           superfamily permease [Herbaspirillum seropedicae SmR1]
          Length = 306

 Score =  499 bits (1284), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 260/282 (92%), Positives = 273/282 (96%)

Query: 1   MWLGLIGVAIFSLTLPFTRIAVAELNPAFVAFGRAVVAGVCALALLAWIKAPRPTRQQLR 60
           MWLGLIGVA+FSLTLPFTRIAVAEL+PAFVAFGRAVVAG+C+LALLAW++APRP  QQLR
Sbjct: 25  MWLGLIGVAVFSLTLPFTRIAVAELSPAFVAFGRAVVAGLCSLALLAWMRAPRPNAQQLR 84

Query: 61  GLVITALGVVVGFPLFSSIAMRYVPAAHGAVVVGLLPLATALFGALRFGERPSKGFWLAA 120
           GLVITALGVVVGFPLFSSIAMRYVPAAHGAVVVGLLPLATALFGALRFGERPS GFWL+A
Sbjct: 85  GLVITALGVVVGFPLFSSIAMRYVPAAHGAVVVGLLPLATALFGALRFGERPSAGFWLSA 144

Query: 121 LAGSGIVIAFALREGGGSFHLADFALFAAVVTAAMGYAEGGRLAQTMGGQNVIAWALVVA 180
           LAGS IVIAFALR GGGSFH ADFALFAAV+TAAMGYAEGGRLAQ+MGGQNVIAWALVVA
Sbjct: 145 LAGSAIVIAFALRAGGGSFHAADFALFAAVITAAMGYAEGGRLAQSMGGQNVIAWALVVA 204

Query: 181 LPVMLPVSVWLGWQYGVTASSPAWLAFAYVSLFSMFIGFFFWYKGLALGGIARVGQVQLL 240
           LPVMLPVS+WLGWQ G++AS+PAWLAF YVSLFSMFIGFFFWYKGLALGGIARVGQVQLL
Sbjct: 205 LPVMLPVSLWLGWQDGLSASAPAWLAFGYVSLFSMFIGFFFWYKGLALGGIARVGQVQLL 264

Query: 241 QPFMSLLGAAVIAHEALDASNMLFALAVIVVVAIGRRMAVRR 282
           QPFMSLLGAAVIA EALDASNMLFALAVIVVVAIGRRMAVRR
Sbjct: 265 QPFMSLLGAAVIAGEALDASNMLFALAVIVVVAIGRRMAVRR 306


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.331    0.142    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 811,366
Number of extensions: 34210
Number of successful extensions: 203
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 3
Length of query: 282
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 198
Effective length of database: 1,222,130
Effective search space: 241981740
Effective search space used: 241981740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 130 (54.7 bits)