BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0204.p
         (273 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311143|ref|YP_003775235.1| Zn-dependent hydrolase [Herbasp...   479   e-137

>gi|300311143|ref|YP_003775235.1| Zn-dependent hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 354

 Score =  479 bits (1234), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 231/280 (82%), Positives = 250/280 (89%), Gaps = 8/280 (2%)

Query: 2   LLAAGLTACSSSSKYYDPNKSNRTETGFRNNYPQPERGSLLKWQWERLTQGLPKPPDNNY 61
           +LA  L ACSSS KY DP+KSNRT++GFRNNY QPERGS  KWQWERLTQGLPKPP+N+Y
Sbjct: 1   MLATSLGACSSSGKYADPSKSNRTDSGFRNNYAQPERGSFWKWQWERLTQGLPKPPENHY 60

Query: 62  QFPVVKPDLAWLKANHGSPSVTWIGHATALVQLGGKNVLTDPMFSQRASPFSFIGPSRKV 121
           QFPV+KPDLAWLK N   PSVTWIGHATALVQLGGKNVLTDPMFSQRASPFSFIGP+RKV
Sbjct: 61  QFPVLKPDLAWLKDNDRHPSVTWIGHATALVQLGGKNVLTDPMFSQRASPFSFIGPARKV 120

Query: 122 PLPVQISELPHIDVVVISHNHYDHLDQASVEQLNLQAGGPPLFLVPLGVRDWFLSLGITN 181
           PLPVQISELPHIDVVVISHNHYDHLD+ASVEQLNLQ GGPPLFLVPLG+RDWF +LGITN
Sbjct: 121 PLPVQISELPHIDVVVISHNHYDHLDRASVEQLNLQPGGPPLFLVPLGLRDWFQALGITN 180

Query: 182 VKEMDWWDKTVMDNLDIYFVPATHWSARGVFDRSETLWGGWVIQA--------AAQQAGA 233
           V+EMDWWDKT +D LDI+FVPATHWSARG+FDRSETLWGGWV+QA          +Q+  
Sbjct: 181 VQEMDWWDKTSLDQLDIHFVPATHWSARGLFDRSETLWGGWVLQAMDCPGKADTTRQSPV 240

Query: 234 EPFSVYFAGDTGYSKDFRDIGERFGRFDLALIPIGAYAPR 273
            PFSVYFAGDTGYS+DFRDIGERFG FDLALIPIGAYAPR
Sbjct: 241 APFSVYFAGDTGYSQDFRDIGERFGHFDLALIPIGAYAPR 280


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.137    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,009,106
Number of extensions: 45399
Number of successful extensions: 102
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 189
Effective length of database: 1,222,130
Effective search space: 230982570
Effective search space used: 230982570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)