BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0201.p
         (150 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309491|ref|YP_003773583.1| cytoplasmic protein [Herbaspiri...   110   7e-26

>gi|300309491|ref|YP_003773583.1| cytoplasmic protein
           [Herbaspirillum seropedicae SmR1]
          Length = 153

 Score =  110 bits (274), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 62/148 (41%), Positives = 86/148 (58%), Gaps = 5/148 (3%)

Query: 4   RIDLYKNATAAYDGLLAVNRHLKQCSLPADLVELVFLRVSLINGCAYCIDKHSRDLLSSG 63
           R+   K A  A++ L+  +  + Q  +   L+ELVFLRVS +NGCA+C+D HS DLL  G
Sbjct: 7   RLPHAKLAAPAFNALIKASEVVHQSGVDPKLLELVFLRVSQLNGCAFCVDMHSHDLLQKG 66

Query: 64  MPVDKLVLVPVWQEAGPLFTPREQAALAWAEVVTRIDQTAA--PDADYQAVIQHFTAQEY 121
               +L  +  W+E  P FT  E+AAL WAE  T + Q  A   DA +  + QHF   E 
Sbjct: 67  EDQQRLNTLAAWREI-PFFTDAERAALNWAERFTHLHQQDADKEDAAFVQLQQHFNDTEI 125

Query: 122 SELTIAIALMNAMNRLAIPGRMQPQAAR 149
           + LT A+A++NA NRL +   M+PQ  R
Sbjct: 126 ANLTFAVAIINAWNRLGVS--MRPQVPR 151


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.133    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 449,059
Number of extensions: 16523
Number of successful extensions: 45
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 1
Length of query: 150
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 73
Effective length of database: 1,255,275
Effective search space: 91635075
Effective search space used: 91635075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 126 (53.1 bits)