BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0200.p (490 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310416|ref|YP_003774508.1| MocR family transcription regul... 290 2e-79 gi|300313928|ref|YP_003778020.1| GntR family transcription regul... 144 2e-35 gi|300311016|ref|YP_003775108.1| MocR family transcription regul... 136 4e-33 gi|300311139|ref|YP_003775231.1| MocR family transcription regul... 127 3e-30 gi|300311134|ref|YP_003775226.1| transcription regulator protein... 122 9e-29 >gi|300310416|ref|YP_003774508.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 290 bits (742), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 179/473 (37%), Positives = 256/473 (54%), Gaps = 9/473 (1%) Query: 22 RQIYARLRSAVADGLLQPGDRIPSARALATELGLARGTVEAAYSLLAAEGYVEARGQAGT 81 RQIY +R A+ L G ++PS+R LA ELG +R TV AY L AEGY+E+R AGT Sbjct: 47 RQIYQLIREAILAHTLPAGMQLPSSRDLALELGSSRNTVTYAYEQLLAEGYLESRPGAGT 106 Query: 82 VIAAGVRPALQAAAGKAT--AAPSRTSPVAARHPLLPDEGQAEPKGPRPFQMGIPALDAF 139 +A + A + PS S ++AR +L + + F G+P + Sbjct: 107 FVADTAPDQIPEAVERPEPLTDPSGKSELSARGAMLTRQAGVGERQWGAFMPGVPDVTCV 166 Query: 140 PRKIWARLAARAVRATQAADMLYPSPAGLMALRTEIARYLQLSRGIDCRAEQVFVTSGYR 199 P KIW RL + R + A + Y AG LR +IA YL+++R ++C QV +T+G Sbjct: 167 PYKIWGRLQNKHWRRSNADLLTYGPGAGYAGLREQIAEYLRVARSVNCTPSQVLITTGIH 226 Query: 200 DSLNLITRTLLQPGDKIWVEDPGYAPTAALLREAGMQLAGIPVDGDGMQVEY-GLRHAAH 258 SL+++ + L + GD WVEDP Y T ++L G+Q I VD +GM++ LR Sbjct: 227 QSLDIVVKLLGEHGDSAWVEDPCYWGTRSVLNSLGIQSVPIAVDQEGMRMRLANLRRPP- 285 Query: 259 ARAAVVTPAHQSPTCVALSLPRRLALLEWAAREQAWIVEDDYDGEYRYVSRPLPALKSLD 318 R TP+HQ P + +SL RR LLE+AA + WI+EDDYD E+RY RPL +L+ +D Sbjct: 286 -RFICTTPSHQYPLGMVMSLSRRRMLLEYAATHKVWIIEDDYDSEFRYGGRPLASLQGMD 344 Query: 319 REDRVLYAGTFSKVLFPAIRLAYLVVPQSQVECFRRSAQLFSGAAPALTQHIVADFMAEG 378 +DRVLY GTFSK++FP +R+ +LVVP+S F Q +ADFMAEG Sbjct: 345 TQDRVLYMGTFSKIMFPGLRIGFLVVPESLARAFSTGIAELYRNGQVFLQATLADFMAEG 404 Query: 379 HFARHIQRMRRLYAQRRTMAIAGLEGVLHSHVRIDSPPGGMHLLLRLQGRRSDRLLADKM 438 HFA HI++MR LYA+R + + + I G+HL+L L D L+ ++ Sbjct: 405 HFASHIRKMRVLYAERLQLLQQSINRHFGEKMTITGGEAGLHLVLGLPQECDDVLICEQA 464 Query: 439 RQHGMFSRALSECLLAPRPGVAPMIMLSFTNI--DSRRRAAE-LARRILPLLA 488 G+ R LS + R G ++L + ++ D RA + LA I P LA Sbjct: 465 LAAGIVVRPLSRYYMHAR-GARRGLLLGYASVPNDEIARAFDKLAAVIKPHLA 516 >gi|300313928|ref|YP_003778020.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 472 Score = 144 bits (362), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 127/440 (28%), Positives = 197/440 (44%), Gaps = 35/440 (7%) Query: 22 RQIYARLRSAVADGL--------LQPGDRIPSARALATELGLARGTVEAAYSLLAAEGYV 73 R+ ARL VA+GL L+ G+R+PS R A + TV AY L A G + Sbjct: 15 RKTSARLVEQVANGLAGLIETGELRSGERLPSVRQFAQHHDIGSSTVVEAYEQLVARGML 74 Query: 74 EARGQAGTVIAAGVRPALQAAAGKATAAPSRTSPVAARHPLLPDEGQAEPKGPRPFQMGI 133 +AR AG +AA +A A PV LL E A+ + P G Sbjct: 75 QARRGAGFFVAA------RAGQSGQHAVFVPPEPVIDSAWLL-SEMFADERVPIKAGCGW 127 Query: 134 PALDAFPRKIWARLAARAVRATQAADMLYPSPAGLMALRTEIARYL---QLSRGIDCRAE 190 + + R +R+ A + Y P G LR I ++L L GI E Sbjct: 128 LPGKWLNDEGLHQAERRIIRSPGAQQVGYGHPYGYAPLRQLITQFLGHWSLELGI----E 183 Query: 191 QVFVTSGYRDSLNLITRTLLQPGDKIWVEDPGYAPTAALLREAGMQLAGIP-----VDGD 245 QV T G +L+L+ RT+ QPGD + ++DPGY A+LR AG+ + G+P VD D Sbjct: 184 QVLTTHGATQALDLVIRTMTQPGDTVLIDDPGYCNLIAMLRLAGLNVIGVPRTPGGVDTD 243 Query: 246 GMQVEYGLRHAAHARAAVVTPAHQSPTCVALSLPRRLALLEWAAREQAWIVEDDYDGEYR 305 ++ L H + T Q+PT + + + +L+ A R W+VEDD E Sbjct: 244 VLET---LARTHHPKMFFTTSVLQNPTGTSYTPACAMRVLQAAERHGFWVVEDDIFRELG 300 Query: 306 YVSRPLPALKSLDREDRVLYAGTFSKVLFPAIRLAYLVVPQSQVECFRRSAQLFSGAAPA 365 + P+ L +LD RV+Y G++SK + P++R+ Y+ + + + + Sbjct: 301 QATDPM--LAALDGLQRVIYVGSYSKTIAPSLRVGYIACQRELARQIVHTKMVLTLTNSE 358 Query: 366 LTQHIVADFMAEGHFARHIQRMRRLYAQRRTMAIAGLEGVLHSHVRIDSPPGGMHLLLRL 425 + + +V + + EGH RH+Q + + A L V + GGM + Sbjct: 359 INERLVHNVLTEGHHRRHVQTLNATLLSAQATLNAKLSEV--GLTPFTAARGGMFSWATI 416 Query: 426 QG-RRSDRLLADKMRQHGMF 444 +G S R +AD+ RQ G++ Sbjct: 417 EGCELSAREIADRARQKGIW 436 >gi|300311016|ref|YP_003775108.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 480 Score = 136 bits (342), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 115/416 (27%), Positives = 199/416 (47%), Gaps = 17/416 (4%) Query: 21 YRQIYARLRSAVADGLLQPGDRIPSARALATELGLARGTVEAAYSLLAAEGYVEARGQAG 80 Y+Q +L +++ DG+L+PG+RI S R + + ++ TV AY LL + G +E++ Q+G Sbjct: 7 YKQFADQLAASIRDGVLRPGERIASVRIASQQHKVSVTTVVRAYELLESRGIIESQPQSG 66 Query: 81 TVI----AAGVRPALQAAAGKATAAPSRTSPVAARHPLLPDEGQAEPKGPRPFQMGIPAL 136 + A +PAL+ + + A ++ V +L + G P P Sbjct: 67 YFVREQPEAPPKPALRTTSREDHPAWQESTEVDVSRLVLATLKTIQQDGTVPLGSPYPNP 126 Query: 137 DAFPRKIWARLAARAVRATQAADMLYPSPAGLMALRTEIARYLQLSRGIDCRAEQVFVTS 196 FP A+ A R R + + P G L +IAR L G+ E++ +T Sbjct: 127 ALFPSHRLAQYAGRIARHASQSSVFDDLPPGHPELLRQIARRY-LENGLKVDPEEIVITV 185 Query: 197 GYRDSLNLITRTLLQPGDKIWVEDPGYAPTAALLREAGMQLAGIPVDGD-GMQV---EYG 252 G +++NL + + +PGD I VE P + + GM+ IP D G+ V E Sbjct: 186 GATEAINLCLQAVARPGDTIAVETPTFYAMLHAIERLGMRALEIPTDPQRGIDVGALEER 245 Query: 253 LRHAAHARAAVVTPAHQSPTCVALSLPRRLALLEWAAREQAWIVEDDYDGEYRYVSRPLP 312 ++ A A A +V P Q+P + + L+ A + Q ++E+ E Y + Sbjct: 246 MKTQAIA-ACMVMPNFQNPLGFQMPDSEKERLVRLAEQHQMPVIENAVYSELYYGNAHPS 304 Query: 313 ALKSLDREDRVLYAGTFSKVLFPAIRLAYLVVP---QSQVECFRRSAQLFSGAAPALTQH 369 +LK+ DR+ VL+ +FSK L A R+ + +P ++QVE + L + A P Q Sbjct: 305 SLKNYDRDGLVLHCSSFSKSLTSAYRIGW-AMPGRYRAQVEKLKF---LNTLATPTAPQR 360 Query: 370 IVADFMAEGHFARHIQRMRRLYAQRRTMAIAGLEGVLHSHVRIDSPPGGMHLLLRL 425 +A+++ +G + RH++R+RR +AQ+R M + + ++ P GG L + L Sbjct: 361 AIAEYLTQGGYERHLRRVRRAFAQQRDMMRHFVLRFFPAGTQVSEPQGGYVLWVEL 416 >gi|300311139|ref|YP_003775231.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 398 Score = 127 bits (318), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 89/297 (29%), Positives = 135/297 (45%), Gaps = 2/297 (0%) Query: 129 FQMGIPALDAFPRKIWARLAARAVRATQAADMLYPSPAGLMALRTEIARYLQLSRGIDCR 188 F G+P+ FP + R + + Y G + LR IA L + G Sbjct: 40 FAGGLPSPLTFPVEHMKTAFDRVLSQQGKMALQYGPTDGYLPLREWIAASLS-TNGAQIS 98 Query: 189 AEQVFVTSGYRDSLNLITRTLLQPGDKIWVEDPGYAPTAALLREAGMQLAGIPVDGDGMQ 248 AEQV + SG + L+L+ + L+ G K+ VE P Y G + +P D G+Q Sbjct: 99 AEQVLMVSGSQQGLDLLGKVLIDEGSKVLVETPSYLGALQAFALYGAKFESVPSDEFGLQ 158 Query: 249 VEYGLRHAAHARAAVVTPAHQSPTCVALSLPRRLALLEWAAREQAWIVEDDYDGEYRYVS 308 E A AR P Q+PT L RR L+E AR ++EDD G Y + Sbjct: 159 PETIEAIAGGARMLYSLPNFQNPTGRTLPTERRFKLVETCARLGLPLIEDDPYGALSYQN 218 Query: 309 RPLPALKSLDREDRVLYAGTFSKVLFPAIRLAYLVVPQSQVECFRRSAQLFSGAAPALTQ 368 PLP + S++ V+Y G+FSKVL P IRL Y+V P+ + ++ Q LTQ Sbjct: 219 APLPKMLSMNPSG-VIYMGSFSKVLTPGIRLGYVVAPRPLILKMEQAKQATDLHTAQLTQ 277 Query: 369 HIVADFMAEGHFARHIQRMRRLYAQRRTMAIAGLEGVLHSHVRIDSPPGGMHLLLRL 425 +V + + +G +H+ +R+LY + + L+ + P GGM + + L Sbjct: 278 MVVYEAIKDGFLDQHVPTIRKLYGDQCQAMLDALQQYFPASCSWSKPEGGMFIWVTL 334 >gi|300311134|ref|YP_003775226.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 500 Score = 122 bits (305), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 120/438 (27%), Positives = 198/438 (45%), Gaps = 26/438 (5%) Query: 15 STGEAYYRQIYARLRSAVADGLLQPGDRIPSARALATELGLARGTVEAAYSLLAAEGYVE 74 +G++ QI +R+ + D LL+ G R+PS R A ++R TV AY L A+GY+E Sbjct: 35 ESGDSLVEQIVRGIRARIDDKLLRSGMRMPSIRQFADTNQISRFTVVEAYDRLVAQGYLE 94 Query: 75 ARGQAGTVIA--AGVRPALQAAAGKATAAPSRTSPVAARHPLLPDEGQAEPKGPRPFQMG 132 +R +G + A + + AA + P R V L+ + + P P Sbjct: 95 SRRGSGFYVKERAPLGGSYGAAQAELDTEPGRGLDVVW---LVRNMFRQMPPAKMPGGGL 151 Query: 133 IPALDAFPRKIWARLAARAVRATQAAD----MLYPSPAGLMALRTEIARYLQLSR-GIDC 187 +P P + L A A+RA + + Y +P G + LR ++ L+L+ I Sbjct: 152 LP-----PDWLDGELIANALRAVSRDNPQLLLGYGTPQGFLPLRQQLQ--LKLAELEIAA 204 Query: 188 RAEQVFVTSGYRDSLNLITRTLLQPGDKIWVEDPGYAPTAALLREAGMQLAGIPVDGDGM 247 EQ+ +T+G L+ + R L+PGD I+V+DP + G ++ GIP GDG Sbjct: 205 APEQIVLTTGVTQGLDTVARHFLRPGDVIFVDDPAWFLMFGSFAALGAKVVGIPRLGDGP 264 Query: 248 QVEYGLRH--AAHA-RAAVVTPAHQSPTCVALSLPRRLALLEWAAREQAWIVEDDYDGEY 304 + LR A H + V+ +PT +LS + +L A IVEDD + Sbjct: 265 DIAR-LRELAAVHKPKLYVINSVLHNPTSTSLSAAKAFQVLRIAEEHDFVIVEDDIYCDM 323 Query: 305 RYVSRPLPALK--SLDREDRVLYAGTFSKVLFPAIRLAYLVVPQSQVECFRRSAQLFSGA 362 S PA + +LD+ RV+Y G FSK L +R+ Y+ L + Sbjct: 324 HPGSAVQPATRIAALDQLQRVIYLGGFSKTLSANLRVGYIATSAELARSLADRKLLSTLT 383 Query: 363 APALTQHIVADFMAEGHFARHIQRMRRLYAQRRTMAIAGLEGVLHSHVRIDSPPGGMHLL 422 + + + ++EGH+ +H +R+R R + LE + V ++PP GM L Sbjct: 384 TGEIGERVAYKVLSEGHYRKHAERVRARLNGARDKVMRQLERLGMDVV--EAPPCGMFLW 441 Query: 423 LRLQGRRSDRLLADKMRQ 440 + GR ++ + M++ Sbjct: 442 VD-TGRDTNVMTEAAMQE 458 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.135 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,492,652 Number of extensions: 63050 Number of successful extensions: 293 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 266 Number of HSP's successfully gapped: 11 Length of query: 490 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 401 Effective length of database: 1,198,455 Effective search space: 480580455 Effective search space used: 480580455 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 132 (55.5 bits)