BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0192.p (915 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311157|ref|YP_003775249.1| multidrug ABC transporter ATPas... 1572 0.0 gi|300311269|ref|YP_003775361.1| multidrug ABC transporter ATPas... 1153 0.0 gi|300310396|ref|YP_003774488.1| sugar ABC transporter ATPase [H... 125 2e-29 gi|300310367|ref|YP_003774459.1| sugar ABC transporter ATPase [H... 122 1e-28 gi|300310063|ref|YP_003774155.1| sugar ABC transporter ATPase [H... 120 5e-28 >gi|300311157|ref|YP_003775249.1| multidrug ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 923 Score = 1572 bits (4070), Expect = 0.0, Method: Compositional matrix adjust. Identities = 799/918 (87%), Positives = 840/918 (91%), Gaps = 8/918 (0%) Query: 6 GQSLVARLSGVSLRYGQKPALQAISLEIPAGCMVGLIGPDGVGKSSLLSLVAGARALQEG 65 G + VARL V+LRYG+ AL A+SL+IPAGCMVGLIGPDGVGKSSLLSLVAGARALQ+G Sbjct: 6 GGACVARLQRVALRYGKTVALDAVSLDIPAGCMVGLIGPDGVGKSSLLSLVAGARALQQG 65 Query: 66 DVEVLGGDMRRAAHREAVCPRIAYMPQGLGKNLYPTLSVEENLQFFGRLFGQSAQERRQR 125 ++ VLGGDMR+ HR+ CPRIAYMPQGLGKNLYPTLSVEENLQFFGRLFGQ A ERR+R Sbjct: 66 ELAVLGGDMRQQRHRQQACPRIAYMPQGLGKNLYPTLSVEENLQFFGRLFGQDASERRRR 125 Query: 126 IDTLTAGTGLSPFLARPAGKLSGGMKQKLGLCCSLIHDPDLLILDEPTTGVDPLSRAQFW 185 ID LT TGL FLARPAGKLSGGMKQKLGLCCSLIHDPDLLILDEPTTGVDPLSRAQFW Sbjct: 126 IDELTTSTGLDKFLARPAGKLSGGMKQKLGLCCSLIHDPDLLILDEPTTGVDPLSRAQFW 185 Query: 186 DLIAHIRQQRPGMSVIVATAYMEEADRFDFLVAMDDGQILATGTPAELHARTGTAALEEA 245 DLIAHIRQQR GMSVIVATAYMEEADRFD+LVAMD+G++LATGTP +LH RTGTA+LEEA Sbjct: 186 DLIAHIRQQRAGMSVIVATAYMEEADRFDWLVAMDEGRVLATGTPVQLHQRTGTASLEEA 245 Query: 246 FIALLPPDKRRGHQPVQVIPLDPARQAEIAIEARGLTMRFGDFVAVDHVDFRIRRGEIFG 305 FIALLP +KRRGHQ VQV PLD + +AIEA+GLTMRFGDF+AVDHVDFRIRRGEIFG Sbjct: 246 FIALLPEEKRRGHQTVQVTPLDDTIDSGVAIEAKGLTMRFGDFLAVDHVDFRIRRGEIFG 305 Query: 306 FLGSNGCGKSTTMKMLTGLLPASEGQAWLFGQAVDPRDMATRARVGYMSQAFSLYGELSV 365 FLGSNGCGKSTTMKMLTGLLPASEGQAWLFG+ +DPRDMATRARVGYMSQAFSLYGELSV Sbjct: 306 FLGSNGCGKSTTMKMLTGLLPASEGQAWLFGREIDPRDMATRARVGYMSQAFSLYGELSV 365 Query: 366 RQNLVLHARLYRVPQEQIAARTEEMAQRFGLQEVMDSLPESLPLGIRQRLSLAVAMVHKP 425 RQNLVLHARLYRVP EQIAART+EMA+RFGL +VMDSLPESLPLGIRQRLSLAVAMVHKP Sbjct: 366 RQNLVLHARLYRVPAEQIAARTDEMARRFGLLDVMDSLPESLPLGIRQRLSLAVAMVHKP 425 Query: 426 ELLILDEPTSGVDPIARDLFWQLMIDLARRDQVTIFISTHFMNEAQRCDRISLMHAGRVL 485 ELLILDEPTSGVDPIARDLFWQLMI LAR+DQVTIFISTHFMNEA RCDRISLMHAGRVL Sbjct: 426 ELLILDEPTSGVDPIARDLFWQLMIGLARQDQVTIFISTHFMNEALRCDRISLMHAGRVL 485 Query: 486 VSATPEELIRQRGSATLEQAFIAYLEEAAGKGAMTPAPEVNVTSARNHAPAGD------- 538 VSATP+ L++QRG+ TLEQAFI YLEEAAGKG A V A A Sbjct: 486 VSATPQALMQQRGAQTLEQAFIGYLEEAAGKGGSAAATHSAVAVAVAPPAASPAASPAPR 545 Query: 539 -GRLRTSLGRALSYSQRESLELRRDPVRATLALLGTVILMFIIGYGINLDVENLSYAVLD 597 R RTSLGRALSYSQRESLELRRDPVRATLALLGT ILMFIIGYGINLDVENLSYAVLD Sbjct: 546 LSRWRTSLGRALSYSQRESLELRRDPVRATLALLGTAILMFIIGYGINLDVENLSYAVLD 605 Query: 598 RDQTGLSQNYALNLSGSRYFIEHPPIRDYQDLDRRMRSGEISLAIEIPPGFARDIARGKP 657 RDQTGLSQNYALNLSGSRYFIE PPI DYQ+LDRRMRSG+ISLAIEIPPGFARDIARG Sbjct: 606 RDQTGLSQNYALNLSGSRYFIEKPPISDYQELDRRMRSGDISLAIEIPPGFARDIARGHT 665 Query: 658 VEVGAWVDGAMPTRAETVRGYVQGMHQLWLADMATHRLGQRLAQPATIETRYRYNPDVKS 717 VEVGAWVDGAMPTRAETVRGYVQGMHQLWLADMATHRLGQ LA PA IETRYRYNPDVKS Sbjct: 666 VEVGAWVDGAMPTRAETVRGYVQGMHQLWLADMATHRLGQSLAMPARIETRYRYNPDVKS 725 Query: 718 LPAMVPAIIPLLLMMIPAMLTALSVVREKELGSILNLYVTPVTRTEFLLGKQLPYLVLGM 777 LPAMVPAIIPLLLMMIPAMLTALSVVREKELGSILNLYVTPV+RTEFLLGKQLPYL+LGM Sbjct: 726 LPAMVPAIIPLLLMMIPAMLTALSVVREKELGSILNLYVTPVSRTEFLLGKQLPYLLLGM 785 Query: 778 LNFAMLTLLAVTVFGVPVKGSLFTLTLAALVFIICSTGFGLLASTFTRSQIAALFVTMIG 837 LNFAMLTLLAVTVFGVPVKGSL TLTLAALVF+ICSTGFGLLASTFT SQIAALFVTMIG Sbjct: 786 LNFAMLTLLAVTVFGVPVKGSLLTLTLAALVFVICSTGFGLLASTFTNSQIAALFVTMIG 845 Query: 838 TIIPCVQFAGLLNPVSSLEGMGALIGQVYPATHFLTISRGVFSKALAVGDLGASFWPLVL 897 TIIPCVQFAGLLNPVSSLEGMGALIGQVYPATHFLTISRGVFSKALA+ DL +SFWPLV+ Sbjct: 846 TIIPCVQFAGLLNPVSSLEGMGALIGQVYPATHFLTISRGVFSKALALDDLASSFWPLVV 905 Query: 898 AAPVILGLSVWLLKKQEQ 915 AAPVILGLSV LLKKQE+ Sbjct: 906 AAPVILGLSVLLLKKQER 923 Score = 133 bits (334), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 81/252 (32%), Positives = 133/252 (52%), Gaps = 9/252 (3%) Query: 1 MTESLGQSLVARLSGVSLRYGQKPALQAISLEIPAGCMVGLIGPDGVGKSSLLSLVAGAR 60 + +++ + G+++R+G A+ + I G + G +G +G GKS+ + ++ G Sbjct: 266 LDDTIDSGVAIEAKGLTMRFGDFLAVDHVDFRIRRGEIFGFLGSNGCGKSTTMKMLTGLL 325 Query: 61 ALQEGDVEVLGG--DMRRAAHREAVCPRIAYMPQGLGKNLYPTLSVEENLQFFGRLFGQS 118 EG + G D R A R R+ YM Q +LY LSV +NL RL+ Sbjct: 326 PASEGQAWLFGREIDPRDMATRA----RVGYMSQAF--SLYGELSVRQNLVLHARLYRVP 379 Query: 119 AQERRQRIDTLTAGTGLSPFLARPAGKLSGGMKQKLGLCCSLIHDPDLLILDEPTTGVDP 178 A++ R D + GL + L G++Q+L L +++H P+LLILDEPT+GVDP Sbjct: 380 AEQIAARTDEMARRFGLLDVMDSLPESLPLGIRQRLSLAVAMVHKPELLILDEPTSGVDP 439 Query: 179 LSRAQFWDLIAHIRQQRPGMSVIVATAYMEEADRFDFLVAMDDGQILATGTPAELHARTG 238 ++R FW L+ + +Q +++ ++T +M EA R D + M G++L + TP L + G Sbjct: 440 IARDLFWQLMIGLARQDQ-VTIFISTHFMNEALRCDRISLMHAGRVLVSATPQALMQQRG 498 Query: 239 TAALEEAFIALL 250 LE+AFI L Sbjct: 499 AQTLEQAFIGYL 510 >gi|300311269|ref|YP_003775361.1| multidrug ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 913 Score = 1153 bits (2982), Expect = 0.0, Method: Compositional matrix adjust. Identities = 583/907 (64%), Positives = 711/907 (78%), Gaps = 5/907 (0%) Query: 11 ARLSGVSLRYGQKPALQAISLEIPAGCMVGLIGPDGVGKSSLLSLVAGARALQEGDVEVL 70 AR+ VS YG+ PAL + L+IP GCM GLIGPDGVGKS+LLSL+AGAR ++ G ++VL Sbjct: 8 ARVHDVSHSYGKNPALSHVELDIPGGCMAGLIGPDGVGKSTLLSLIAGARRIRAGRIDVL 67 Query: 71 GGDMRRAAHREAVCPRIAYMPQGLGKNLYPTLSVEENLQFFGRLFGQSAQERRQRIDTLT 130 GGD+ +AAHR+AV P IAYMPQGLGKNLYPTLSVEENLQF RLFGQ AQERRQRID LT Sbjct: 68 GGDIGQAAHRDAVGPCIAYMPQGLGKNLYPTLSVEENLQFIARLFGQDAQERRQRIDDLT 127 Query: 131 AGTGLSPFLARPAGKLSGGMKQKLGLCCSLIHDPDLLILDEPTTGVDPLSRAQFWDLIAH 190 TGL PFLARPAG+LSGGMKQKL LCC+LIHDPDLLILDEPTTGVDPL+RAQFW+LIA Sbjct: 128 HSTGLQPFLARPAGQLSGGMKQKLSLCCALIHDPDLLILDEPTTGVDPLARAQFWELIAR 187 Query: 191 IRQQRPGMSVIVATAYMEEADRFDFLVAMDDGQILATGTPAELHARTGTAALEEAFIALL 250 +RQ+ PGMSVIVATAYM+EA FD+L MD GQ+LATGTPA L ARTG ++LE AFIALL Sbjct: 188 LRQRHPGMSVIVATAYMDEAQAFDWLAVMDQGQVLATGTPAALLARTGASSLERAFIALL 247 Query: 251 PPDKRRGHQPVQVIPLDPARQAEIAIEARGLTMRFGD-FVAVDHVDFRIRRGEIFGFLGS 309 P ++ GH+ + + PL+ +IAIEA L+MRF D F AVDHV FRIRRGEIFGFLGS Sbjct: 248 PAHRKAGHEALSIPPLE-THADDIAIEAENLSMRFADGFTAVDHVSFRIRRGEIFGFLGS 306 Query: 310 NGCGKSTTMKMLTGLLPASEGQAWLFGQAVDPRDMATRARVGYMSQAFSLYGELSVRQNL 369 NGCGK+TTMKMLTGLLPAS G+A LFGQ +DPRD+ R RVGYMSQ+FSLY +LSVRQNL Sbjct: 307 NGCGKTTTMKMLTGLLPASSGRARLFGQEIDPRDVCLRKRVGYMSQSFSLYKDLSVRQNL 366 Query: 370 VLHARLYRVPQEQIAARTEEMAQRFGLQEVMDSLPESLPLGIRQRLSLAVAMVHKPELLI 429 LHARL+ +P QI R EMA+RF L VMDSL LP+GIRQRLSLAVA +H PE+LI Sbjct: 367 ALHARLFHLPAAQIGPRVAEMARRFALMPVMDSLAADLPMGIRQRLSLAVATIHGPEILI 426 Query: 430 LDEPTSGVDPIARDLFWQLMIDLARRDQVTIFISTHFMNEAQRCDRISLMHAGRVLVSAT 489 LDEPTSGVDP+ARD FWQL++ L+RRD+VTIF+STHFMNEA RCDR+S+MHAG+VL S T Sbjct: 427 LDEPTSGVDPVARDHFWQLLVTLSRRDKVTIFLSTHFMNEALRCDRMSMMHAGKVLDSDT 486 Query: 490 PEELIRQRGSATLEQAFIAYLEEAAGKGAMTPAPEVNVTSARNHAPAGDGRLRT-SLGRA 548 P L+ +RG+ATLEQAFI YL +A P + P+ + S R Sbjct: 487 PAALMHKRGAATLEQAFIGYLVQAGQDEKHAPGQSRQTAAMPPGLPSHPAPPTSFSWQRM 546 Query: 549 LSYSQRESLELRRDPVRATLALLGTVILMFIIGYGINLDVENLSYAVLDRDQTGLSQNYA 608 LSY+ RE+LELRRDPVRAT+ALLG+++LMF+IGYGI+ DV L YAVLD+DQ+ S++YA Sbjct: 547 LSYAWREALELRRDPVRATMALLGSLLLMFVIGYGISTDVNGLPYAVLDQDQSSASRDYA 606 Query: 609 LNLSGSRYFIEHPPIRDYQDLDRRMRSGEISLAIEIPPGFARDIARGKPVEVGAWVDGAM 668 L S YF E P++ LD+RMR+GE++LAIEIP GF R +A G+ VE+GAW++GAM Sbjct: 607 AALRASPYFQERAPLQGPAQLDKRMRNGELTLAIEIPSGFGRRLAAGRQVEIGAWINGAM 666 Query: 669 PTRAETVRGYVQGMHQLWLADMATHRLGQRLAQPA-TIETRYRYNPDVKSLPAMVPAIIP 727 P+RAETV+ YVQGMHQ WL + RL R PA I+TR RYN D++SLPA++PA+IP Sbjct: 667 PSRAETVQAYVQGMHQHWL-EQRQQRLQGRPQTPALEIQTRLRYNADLRSLPAILPAVIP 725 Query: 728 LLLMMIPAMLTALSVVREKELGSILNLYVTPVTRTEFLLGKQLPYLVLGMLNFAMLTLLA 787 LLL+ +PAMLTAL+VVREKELG+I+N YVTPVTR EFL GKQLPY+ LGM NF ++++ A Sbjct: 726 LLLLTLPAMLTALAVVREKELGAIINFYVTPVTRLEFLCGKQLPYIALGMFNFLLMSMAA 785 Query: 788 VTVFGVPVKGSLFTLTLAALVFIICSTGFGLLASTFTRSQIAALFVTMIGTIIPCVQFAG 847 VT+ +PVKGS L LA LV+++ +TG GL+AS TRSQIAA+F ++GT++P QFAG Sbjct: 786 VTLLELPVKGSYAALALATLVYLVIATGMGLVASALTRSQIAAMFAALLGTLVPATQFAG 845 Query: 848 LLNPVSSLEGMGALIGQVYPATHFLTISRGVFSKALAVGDLGASFWPLVLAAPVILGLSV 907 + PVS+LEGMG L+G ++PATH ISRGV+ KAL + D+ S L+ PV++GL+V Sbjct: 846 MTTPVSALEGMGRLVGDIHPATHMFLISRGVYVKALGLADVATSLALLLATLPVVMGLAV 905 Query: 908 WLLKKQE 914 +L+KQE Sbjct: 906 LMLRKQE 912 Score = 144 bits (364), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 92/258 (35%), Positives = 145/258 (56%), Gaps = 11/258 (4%) Query: 275 AIEARGLTMRFGDFVAVDHVDFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGQAWL 334 A ++ +G A+ HV+ I G + G +G +G GKST + ++ G G+ + Sbjct: 7 AARVHDVSHSYGKNPALSHVELDIPGGCMAGLIGPDGVGKSTLLSLIAGARRIRAGRIDV 66 Query: 335 FGQAVDPRDMATRARVG----YMSQAF--SLYGELSVRQNLVLHARLYRVPQEQIAARTE 388 G D A R VG YM Q +LY LSV +NL ARL+ ++ R + Sbjct: 67 LGG--DIGQAAHRDAVGPCIAYMPQGLGKNLYPTLSVEENLQFIARLFGQDAQERRQRID 124 Query: 389 EMAQRFGLQEVMDSLPESLPLGIRQRLSLAVAMVHKPELLILDEPTSGVDPIARDLFWQL 448 ++ GLQ + L G++Q+LSL A++H P+LLILDEPT+GVDP+AR FW+L Sbjct: 125 DLTHSTGLQPFLARPAGQLSGGMKQKLSLCCALIHDPDLLILDEPTTGVDPLARAQFWEL 184 Query: 449 MIDLARRDQ-VTIFISTHFMNEAQRCDRISLMHAGRVLVSATPEELIRQRGSATLEQAFI 507 + L +R +++ ++T +M+EAQ D +++M G+VL + TP L+ + G+++LE+AFI Sbjct: 185 IARLRQRHPGMSVIVATAYMDEAQAFDWLAVMDQGQVLATGTPAALLARTGASSLERAFI 244 Query: 508 AYL--EEAAGKGAMTPAP 523 A L AG A++ P Sbjct: 245 ALLPAHRKAGHEALSIPP 262 >gi|300310396|ref|YP_003774488.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 506 Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 127/501 (25%), Positives = 227/501 (45%), Gaps = 42/501 (8%) Query: 12 RLSGVSLRYGQKPALQAISLEIPAGCMVGLIGPDGVGKSSLLSLVAGARALQEGDVEVLG 71 +L+G+ +G L+ + LE+ AG + L+G +G GKS+L+ ++ G G++ + G Sbjct: 7 QLTGIKKNFGPVTVLRGVDLEVRAGEVHALLGENGAGKSTLMKILCGIVRPDAGEIRIDG 66 Query: 72 GDMRRAAHREAVCPRIAYMPQGLGKNLYPTLSVEENLQFFGRLFG------QSAQERRQR 125 R ++R A+ + + Q +L P L +N+ F R Q A RR R Sbjct: 67 QPCRFDSYRAAIAGGVGVVFQEF--SLIPYLDAVDNM-FLARELRSRWGWLQRAAMRR-R 122 Query: 126 IDTLTAGTGLSPFLARPAGKLSGGMKQKLGLCCSLIHDPDLLILDEPTTGVDPLSRAQFW 185 + G++ L P KLS +Q + + +L D +L+LDEPT + P + Sbjct: 123 AQEIIGQLGVAIPLDVPVCKLSVAQQQFVEIAKALALDARILVLDEPTATLTPAEVEHLF 182 Query: 186 DLIAHIRQQRPGMSVIVATAYMEEA-DRFDFLVAMDDGQILATGTPAEL-HARTGTAALE 243 ++ +R Q G+++I + ++EE + D + + DG +AT AE+ AR + Sbjct: 183 AVMRSLRAQ--GVAIIFISHHLEEIFEICDRITVLRDGAYVATCATAEVDQARLVEMMVG 240 Query: 244 EAFIALLPPDKRRGHQPVQVIPLDPARQAEIAIEARGLTMRFGDFVAVDHVDFRIRRGEI 303 PP +G + + E+ +E L +R V+ F++RRGEI Sbjct: 241 RRIENCFPPKPAKGGEG----------EGEVVLEVHALQLRRQAPVS----QFQLRRGEI 286 Query: 304 FGFLGSNGCGKSTTMKMLTGLLPASEGQAWLFG---QAVDPRDMATRARVGYMSQAFSLY 360 GF G G G++ T+ + G A + + G + DP A +A +G + ++ Sbjct: 287 LGFAGLVGSGRTETVLAMLGAHAALSCKLSMHGVPLRFADPAQ-ALQAGIGLLPESRKEQ 345 Query: 361 G---ELSVRQNLVLHAR-LYRVPQEQIAARTEEMAQRFGLQEVMDSLP------ESLPLG 410 G S+ N+ L+ YR+ + R E+ A +Q V P ++L G Sbjct: 346 GLITSFSILHNVSLNNYGKYRLGGLFLDRRREQQATEAAMQRVRVKAPGAQVRVDTLSGG 405 Query: 411 IRQRLSLAVAMVHKPELLILDEPTSGVDPIARDLFWQLMIDLARRDQVTIFISTHFMNEA 470 +Q++ +A + H ++LI DEPT G+D A+ +QLM + + + IS+ Sbjct: 406 NQQKVVIARWINHAMKVLIFDEPTRGIDVGAKSEIYQLMREFTAQGYSILMISSELPEVV 465 Query: 471 QRCDRISLMHAGRVLVSATPE 491 DR+ + G ++ + E Sbjct: 466 GMADRVCVFRGGGIVATLEGE 486 Score = 89.7 bits (221), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 75/276 (27%), Positives = 121/276 (43%), Gaps = 16/276 (5%) Query: 280 GLTMRFGDFVAVDHVDFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGQAWLFGQAV 339 G+ FG + VD +R GE+ LG NG GKST MK+L G++ G+ + GQ Sbjct: 10 GIKKNFGPVTVLRGVDLEVRAGEVHALLGENGAGKSTLMKILCGIVRPDAGEIRIDGQPC 69 Query: 340 --DPRDMATRARVGYMSQAFSLYGELSVRQNLV----LHARLYRVPQEQIAARTEEMAQR 393 D A VG + Q FSL L N+ L +R + + + R +E+ + Sbjct: 70 RFDSYRAAIAGGVGVVFQEFSLIPYLDAVDNMFLARELRSRWGWLQRAAMRRRAQEIIGQ 129 Query: 394 FGLQEVMDSLPESLPLGIRQRLSLAVAMVHKPELLILDEPTSGVDPIARDLFWQLMIDLA 453 G+ +D L + +Q + +A A+ +L+LDEPT+ + P + + +M L Sbjct: 130 LGVAIPLDVPVCKLSVAQQQFVEIAKALALDARILVLDEPTATLTPAEVEHLFAVMRSLR 189 Query: 454 RRDQVTIFISTHFMNEAQRCDRISLMHAGRVLVSATPEELIRQRGSATLEQAFIAYLEEA 513 + IFIS H + CDRI+++ G + + E+ + R +E +E Sbjct: 190 AQGVAIIFISHHLEEIFEICDRITVLRDGAYVATCATAEVDQAR---LVEMMVGRRIENC 246 Query: 514 -------AGKGAMTPAPEVNVTSARNHAPAGDGRLR 542 G+G EV+ R AP +LR Sbjct: 247 FPPKPAKGGEGEGEVVLEVHALQLRRQAPVSQFQLR 282 >gi|300310367|ref|YP_003774459.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 516 Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 149/522 (28%), Positives = 242/522 (46%), Gaps = 69/522 (13%) Query: 1 MTESLGQSL--VARLSGVSLRYGQKPALQAISLEIPAGCMVGLIGPDGVGKSSLLSLVAG 58 MT S+G + LSG+ + AL + L + G + L+G +G GKS+L+ ++ G Sbjct: 1 MTMSVGTQARPMLELSGIHKAFAGVKALTDVGLRLFPGEVHTLMGQNGAGKSTLIKVLTG 60 Query: 59 ARALQEGDVEVLGGDMRRAAHREAVCPRIAYMPQGLGKNLYPTLSVEENLQFFGRL---F 115 G +E+ G + A+ EA I+ + Q + NL P LSV EN+ F GR F Sbjct: 61 VHEPDGGKIELDGRAIAPASTLEAQALGISTVYQEV--NLCPNLSVAENI-FVGRYPTRF 117 Query: 116 GQSAQERRQRIDTLTAGT---------GLSPFLARPAGKLSGGMKQKLGLCCSLIHDPDL 166 G RID + T + +A P ++Q + + +L + Sbjct: 118 G--------RIDWKSVHTQSRQLLQQLQIDIDVAAPLSSYPLAIQQMVAISRALSVSAKV 169 Query: 167 LILDEPTTGVDPLSRAQFWDLIAHIRQQRPGMSVIVATAYMEE----ADRFDFL-VAMDD 221 LILDEPT+ +D Q + ++ +R+Q GM+++ T ++++ +DR L + + Sbjct: 170 LILDEPTSSLDEAEVQQLFKVLRRLREQ--GMAILFVTHFLDQTYEISDRITVLRNGVRE 227 Query: 222 GQILATGTPAELHARTGTAALEEAFIALLPPDKRRGHQPVQVI----PLDPARQAEIAIE 277 G+ L + EL L + + D R+ + + D A + ++ Sbjct: 228 GEYLVS----ELS----RLDLVNKMVGVTAVDHRKVEAGAEALASELSTDAAAAGAVFLQ 279 Query: 278 ARGLTMRFGDFVAVDHVDFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGQAWLFGQ 337 A G FG + D ++RRGE+FG G G G++ ++L G A GQ + G+ Sbjct: 280 AEG----FGRRGVLAPQDLQLRRGEVFGLCGLLGSGRTEMARLLFGADRADCGQLRIEGK 335 Query: 338 AVD---PRDMATRARVGYMSQAFSLYG---ELSVRQNLVL--HAR--LYRV----PQEQI 383 V PRD A A +G+ S+ G ELSVR+N++L AR L+RV Q QI Sbjct: 336 EVRLNVPRD-AIAAGIGFCSEDRKKEGAILELSVRENIILALQARQGLFRVLPRKRQNQI 394 Query: 384 AARTEEMAQRFGLQEVMDSLPESL-PLGIRQRLSLAVAMVHKPELLILDEPTSGVDPIAR 442 AA + + G++ P L G +Q+ LA + P +LILDEPT G+D A+ Sbjct: 395 AA---DYVKWLGIKTADLETPIGLLSGGNQQKALLARWLATDPGMLILDEPTRGIDVRAK 451 Query: 443 DLFWQLMIDLARRDQVTIFISTHFMNEAQRC-DRISLMHAGR 483 +I + R+ +FIS+ + E RC DR+ ++ R Sbjct: 452 QEIMDFVIAMCRKGMSILFISSE-IPEVLRCSDRMLVLRDRR 492 >gi|300310063|ref|YP_003774155.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 521 Score = 120 bits (301), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 135/508 (26%), Positives = 224/508 (44%), Gaps = 61/508 (12%) Query: 7 QSLVARLSGVSLRYGQKPALQAISLEIPAGCMVGLIGPDGVGKSSLLSLVAGARALQEGD 66 Q+ + ++ G+ +G AL + L I G + L+G +G GKS+L+ +++G A +G+ Sbjct: 3 QTPLLQMRGIRKSFGATLALSDMHLTIRPGEIHALMGENGAGKSTLMKVLSGVHAPDQGE 62 Query: 67 VEVLGGDMRRAAHREAVCPRIAYMPQGLGKNL-YPTLSVEENLQFFGRLF-GQSAQER-- 122 + + D R A R+ R A G NL Y L+V N+ +F G + R Sbjct: 63 ILL---DGRPVALRDPGASRAA------GINLIYQELAVAPNISVAANVFMGSELRTRLG 113 Query: 123 -------RQRIDT----LTAGTGLSPFLARPAGKLSGGMKQKLGLCCSLIHDPDLLILDE 171 R R D L AG G S AG+LS +Q++ + +L+H ++I+DE Sbjct: 114 LIDHAAMRSRTDAVLRQLGAGFGASDL----AGRLSIAEQQQVEIARALVHRSRIVIMDE 169 Query: 172 PTTGVDPLSRAQFWDLIAHIRQQRPGMSVIVATAYMEE----ADRFDFLVAMDDGQILAT 227 PT + Q ++++ +R + G+++I + M E ADR L DG + Sbjct: 170 PTAALSERETEQLFNVVRRLRDE--GLAIIYISHRMAEVYALADRVTVL---RDGSFVGE 224 Query: 228 GTPAELHARTGTAALEEAFIALLPPDKRRGHQPVQVIPLDPARQAEIAIEARGLTMRFGD 287 E+ + E ++ +Q ++ P D A Q ++ R L Sbjct: 225 LVRDEIDS-------ERIVQMMVGRSLSEFYQHQRIAPADAA-QLPTVMQVRALA----- 271 Query: 288 FVAVDHVDFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGQAWLFGQAV--DPRDMA 345 + F +R GE+ GF G G G++ ++L G P S G L G+ V D A Sbjct: 272 GGKIRPASFDVRAGEVLGFAGLVGAGRTELARLLFGADPRSGGDILLEGRPVHIDQPRAA 331 Query: 346 TRARVGYM---SQAFSLYGELSVRQNLVL-----HARLYRVPQEQIAARTEEMAQRFGLQ 397 RA + Y+ + L+ +++V N + H RL V + QR ++ Sbjct: 332 MRAGIAYVPEDRKGQGLFLQMAVAANATMNVASRHTRLGLVRSRSLGGVARAAIQRLNVK 391 Query: 398 EVMDSLP-ESLPLGIRQRLSLAVAMVHKPELLILDEPTSGVDPIARDLFWQLMIDLARRD 456 P L G +Q++ LA + P++LILDEPT GVD A+ +QL+ LA + Sbjct: 392 VAHPETPVGKLSGGNQQKVLLARWLEIAPKVLILDEPTRGVDIYAKSEIYQLVHRLASQG 451 Query: 457 QVTIFISTHFMNEAQRCDRISLMHAGRV 484 + IS+ CDR+ +M G + Sbjct: 452 VAVVVISSELPEVIGICDRVLVMREGMI 479 Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/228 (26%), Positives = 113/228 (49%), Gaps = 6/228 (2%) Query: 276 IEARGLTMRFGDFVAVDHVDFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGQAWLF 335 ++ RG+ FG +A+ + IR GEI +G NG GKST MK+L+G+ +G+ L Sbjct: 7 LQMRGIRKSFGATLALSDMHLTIRPGEIHALMGENGAGKSTLMKVLSGVHAPDQGEILLD 66 Query: 336 GQAVDPRD-MATRAR-VGYMSQAFSLYGELSVRQNLV----LHARLYRVPQEQIAARTEE 389 G+ V RD A+RA + + Q ++ +SV N+ L RL + + +RT+ Sbjct: 67 GRPVALRDPGASRAAGINLIYQELAVAPNISVAANVFMGSELRTRLGLIDHAAMRSRTDA 126 Query: 390 MAQRFGLQEVMDSLPESLPLGIRQRLSLAVAMVHKPELLILDEPTSGVDPIARDLFWQLM 449 + ++ G L L + +Q++ +A A+VH+ ++I+DEPT+ + + + ++ Sbjct: 127 VLRQLGAGFGASDLAGRLSIAEQQQVEIARALVHRSRIVIMDEPTAALSERETEQLFNVV 186 Query: 450 IDLARRDQVTIFISTHFMNEAQRCDRISLMHAGRVLVSATPEELIRQR 497 L I+IS DR++++ G + +E+ +R Sbjct: 187 RRLRDEGLAIIYISHRMAEVYALADRVTVLRDGSFVGELVRDEIDSER 234 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.138 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,937,119 Number of extensions: 132815 Number of successful extensions: 1201 Number of sequences better than 1.0e-08: 131 Number of HSP's gapped: 824 Number of HSP's successfully gapped: 255 Length of query: 915 Length of database: 1,619,870 Length adjustment: 94 Effective length of query: 821 Effective length of database: 1,174,780 Effective search space: 964494380 Effective search space used: 964494380 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 135 (56.6 bits)