BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0191.p (405 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311158|ref|YP_003775250.1| multidrug ABC transporter perme... 495 e-141 gi|300311268|ref|YP_003775360.1| multidrug ABC transporter perme... 317 2e-87 gi|300311269|ref|YP_003775361.1| multidrug ABC transporter ATPas... 80 3e-16 gi|300311157|ref|YP_003775249.1| multidrug ABC transporter ATPas... 79 8e-16 >gi|300311158|ref|YP_003775250.1| multidrug ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 375 Score = 495 bits (1274), Expect = e-141, Method: Compositional matrix adjust. Identities = 257/287 (89%), Positives = 271/287 (94%) Query: 7 SLSNIFRLGVKELWSLLRDPAMLVLIAYTFTLSIYVAATAMPESLHNAAIAVVDNDGSPL 66 S +NI+RLG+KELWSLLRDPAMLVLIAYTF+LSIYVAATAMPESLH+AAIA+VDND SPL Sbjct: 4 SWANIYRLGIKELWSLLRDPAMLVLIAYTFSLSIYVAATAMPESLHHAAIAIVDNDSSPL 63 Query: 67 SARIASLFYPPHFKVARLVTAREADAGLDAGDFTFVLDIPADFQRDVLAGRAPAVQLNVD 126 SARIA+ FYPPHFKVARLVTAR+ADAGLD GD+TFVLDIPADFQRDVLA RAPAVQLNVD Sbjct: 64 SARIAASFYPPHFKVARLVTARQADAGLDDGDYTFVLDIPADFQRDVLAARAPAVQLNVD 123 Query: 127 ATRMSQAFTGNSYIQQMVSNEVTQFVRRSEAAGDAPVGLALRMRFNPNLEQSWFGSLMEI 186 ATRMSQAFTGNSYIQQMV+NEV QFV+R E APV LALRMRFNPNLEQSWFGSLMEI Sbjct: 124 ATRMSQAFTGNSYIQQMVTNEVAQFVQRQEGGASAPVNLALRMRFNPNLEQSWFGSLMEI 183 Query: 187 INNVTMLSIILTGAALIREREHGTIEHLLVMPVSPAEIMLAKVWAMGSVVALAALMSLLL 246 INNVTMLSIILTGAALIREREHGTIEHLLVMPV+PAEIMLAKVW+MG VVALAAL SLLL Sbjct: 184 INNVTMLSIILTGAALIREREHGTIEHLLVMPVTPAEIMLAKVWSMGVVVALAALASLLL 243 Query: 247 IVRGALQVPIEGSLALFMLVTVLHLFATTSMGIFMATLARSMPQFGM 293 IVRGAL VPIEGS+ALFMLVT LHLFATTSMGIFMATLARSMPQFGM Sbjct: 244 IVRGALHVPIEGSVALFMLVTCLHLFATTSMGIFMATLARSMPQFGM 290 >gi|300311268|ref|YP_003775360.1| multidrug ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 375 Score = 317 bits (811), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 159/285 (55%), Positives = 212/285 (74%) Query: 8 LSNIFRLGVKELWSLLRDPAMLVLIAYTFTLSIYVAATAMPESLHNAAIAVVDNDGSPLS 67 L+N+++L +KELWSL RD ML LI +FT +Y AA+A+P++L +AAIA+VD D SPLS Sbjct: 5 LANLWQLTLKELWSLWRDRVMLCLIVLSFTGMVYSAASAIPDTLSHAAIAIVDEDDSPLS 64 Query: 68 ARIASLFYPPHFKVARLVTAREADAGLDAGDFTFVLDIPADFQRDVLAGRAPAVQLNVDA 127 R+A+ F P F + ++ E DAGLDAG + FVL PA Q + G+ VQLNVDA Sbjct: 65 QRLAAAFMAPQFSPPQRISVAEMDAGLDAGRYVFVLHFPAGLQSKLQTGKPAEVQLNVDA 124 Query: 128 TRMSQAFTGNSYIQQMVSNEVTQFVRRSEAAGDAPVGLALRMRFNPNLEQSWFGSLMEII 187 TRM QA++G++Y++Q++ E+ +F+++ + LALR RFNP LE++WF S+++II Sbjct: 125 TRMDQAYSGSAYVEQILQLEIRRFLQKRQDEPREAATLALRARFNPALEKTWFSSVLQII 184 Query: 188 NNVTMLSIILTGAALIREREHGTIEHLLVMPVSPAEIMLAKVWAMGSVVALAALMSLLLI 247 +N+TML+IIL GAALIREREHGTIEHLLVMPVSP +IM AKV AMG VV +AA +SL + Sbjct: 185 DNITMLAIILAGAALIREREHGTIEHLLVMPVSPVQIMGAKVLAMGGVVLVAATLSLHGV 244 Query: 248 VRGALQVPIEGSLALFMLVTVLHLFATTSMGIFMATLARSMPQFG 292 VRG L VPIEGS+ LF+ L LFA T++GI +AT+ARSMPQFG Sbjct: 245 VRGLLDVPIEGSVGLFLFGAALSLFANTALGISLATVARSMPQFG 289 >gi|300311269|ref|YP_003775361.1| multidrug ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 913 Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 75/277 (27%), Positives = 131/277 (47%), Gaps = 10/277 (3%) Query: 17 KELWSLLRDPAMLVLIAYTFTLSIYVAATAMPESLHNAAIAVVDNDGSPLSARIAS-LFY 75 +E L RDP + L ++V + ++ AV+D D S S A+ L Sbjct: 552 REALELRRDPVRATMALLGSLLLMFVIGYGISTDVNGLPYAVLDQDQSSASRDYAAALRA 611 Query: 76 PPHFKV-ARLVTAREADAGLDAGDFTFVLDIPADFQRDVLAGRAPAVQLNVDATRMSQAF 134 P+F+ A L + D + G+ T ++IP+ F R + AGR + ++ S+A Sbjct: 612 SPYFQERAPLQGPAQLDKRMRNGELTLAIEIPSGFGRRLAAGRQVEIGAWINGAMPSRAE 671 Query: 135 TGNSYIQQMVSNEVTQFVRRSEAAGDAP-VGLALRMRFNPNLEQSWFGSLMEIINNVTML 193 T +Y+Q M + + Q +R + P + + R+R+N +L +S L +I + + Sbjct: 672 TVQAYVQGMHQHWLEQRQQRLQGRPQTPALEIQTRLRYNADL-RSLPAILPAVIPLLLLT 730 Query: 194 SIILTGA-ALIREREHGTIEHLLVMPVSPAEIMLAKVWAMGSVVALAALMSLLLIVRGA- 251 + A A++RE+E G I + V PV+ E + K +AL LL+ + Sbjct: 731 LPAMLTALAVVREKELGAIINFYVTPVTRLEFLCGKQL---PYIALGMFNFLLMSMAAVT 787 Query: 252 -LQVPIEGSLALFMLVTVLHLFATTSMGIFMATLARS 287 L++P++GS A L T+++L T MG+ + L RS Sbjct: 788 LLELPVKGSYAALALATLVYLVIATGMGLVASALTRS 824 >gi|300311157|ref|YP_003775249.1| multidrug ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 923 Score = 78.6 bits (192), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 74/297 (24%), Positives = 138/297 (46%), Gaps = 18/297 (6%) Query: 1 MRRAPASLSNIFRLGVKELWSLLRDPAMLVLIAYTFTLSIYVAATAMPESLHNAAIAVVD 60 + R SL +E L RDP L + +++ + + N + AV+D Sbjct: 546 LSRWRTSLGRALSYSQRESLELRRDPVRATLALLGTAILMFIIGYGINLDVENLSYAVLD 605 Query: 61 NDGSPLSARIASLFYPPHFKVAR--LVTAREADAGLDAGDFTFVLDIPADFQRDVLAGRA 118 D + LS A + + + + +E D + +GD + ++IP F RD+ G Sbjct: 606 RDQTGLSQNYALNLSGSRYFIEKPPISDYQELDRRMRSGDISLAIEIPPGFARDIARGHT 665 Query: 119 PAVQLNVDATRMSQAFTGNSYIQQM----VSNEVTQFVRRSEAAGDAPVGLALRMRFNPN 174 V VD ++A T Y+Q M +++ T + +S A P + R R+NP+ Sbjct: 666 VEVGAWVDGAMPTRAETVRGYVQGMHQLWLADMATHRLGQSLA---MPARIETRYRYNPD 722 Query: 175 LEQ--SWFGSLMEIINNVTMLSIILTGAALIREREHGTIEHLLVMPVSPAEIMLAKV--W 230 ++ + +++ ++ + M+ +LT +++RE+E G+I +L V PVS E +L K + Sbjct: 723 VKSLPAMVPAIIPLL--LMMIPAMLTALSVVREKELGSILNLYVTPVSRTEFLLGKQLPY 780 Query: 231 AMGSVVALAALMSLLLIVRGALQVPIEGSLALFMLVTVLHLFATTSMGIFMATLARS 287 + ++ A L L + V G VP++GSL L ++ + +T G+ +T S Sbjct: 781 LLLGMLNFAMLTLLAVTVFG---VPVKGSLLTLTLAALVFVICSTGFGLLASTFTNS 834 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.134 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,290,088 Number of extensions: 52844 Number of successful extensions: 157 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 151 Number of HSP's successfully gapped: 4 Length of query: 405 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 318 Effective length of database: 1,207,925 Effective search space: 384120150 Effective search space used: 384120150 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 132 (55.5 bits)