BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0179.p
         (232 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311166|ref|YP_003775258.1| transcription regulator protein...   375   e-105
gi|300311738|ref|YP_003775830.1| RpiR family transcription regul...    59   4e-10

>gi|300311166|ref|YP_003775258.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 327

 Score =  375 bits (963), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/233 (79%), Positives = 202/233 (86%), Gaps = 6/233 (2%)

Query: 1   VEKLREQVQRTATSAEIMAAAFDSDIANIEATRRMLTPEHCEQAVDMILSAQRIFITGFG 60
           VEKLR +VQR ATSAEIMAAAFDSDIANIEATRRMLT   CE AVDMIL+A+RIFITGFG
Sbjct: 94  VEKLRNEVQRAATSAEIMAAAFDSDIANIEATRRMLTASDCEAAVDMILAAERIFITGFG 153

Query: 61  ASAYLSGLMAHTLEPYVRTVSSVAMAGGPSQAARQFFKLDSDDLVIAMVFPRYAADTVWL 120
           ASAYL+GLMAH LEPYVRTVSSVA+AGGPSQA RQFFKLD+ DLVI MVFPRYAADTVWL
Sbjct: 154 ASAYLAGLMAHALEPYVRTVSSVALAGGPSQAGRQFFKLDNRDLVIPMVFPRYAADTVWL 213

Query: 121 TQRAVEKGARVIALTDTPGSPLVPLADVALYAQTDGRLAPTSDAAALILIQALCDAVAHR 180
           TQRAVEKGAR++A+TD+PGSPLVPLADV +YAQTD +L+PTSDAAALILIQALCDAVAHR
Sbjct: 214 TQRAVEKGARILAITDSPGSPLVPLADVTIYAQTDRKLSPTSDAAALILIQALCDAVAHR 273

Query: 181 ARRSVQAATQMAEFVLPWLYLAQQQQR------AGTTPVGKPVRAAAKRAPTK 227
           ARRSVQAA+QMAEFVLPWLYL QQQQR      AG     K  +  + R  TK
Sbjct: 274 ARRSVQAASQMAEFVLPWLYLPQQQQRPVVSKAAGRAKTAKTAKDVSTRRKTK 326


>gi|300311738|ref|YP_003775830.1| RpiR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 281

 Score = 58.5 bits (140), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 2/150 (1%)

Query: 39  EHCEQAVDMILSAQRIFITGFGASAYLSGLMAHTLEPYVRTVSSVAMAGGPSQAARQFFK 98
           E  E AV ++L A+ I++ G   S  ++  +A+ L+   + V  ++ AGG  +   +   
Sbjct: 123 EQFEAAVKLLLKAENIYVIGVRRSFPIANHLAYALQHTNKRVHLISGAGGMFR--EEVRS 180

Query: 99  LDSDDLVIAMVFPRYAADTVWLTQRAVEKGARVIALTDTPGSPLVPLADVALYAQTDGRL 158
           +D  D++IA+ F  Y  +T    + A  + AR + +TD+  SPL   A V L  +     
Sbjct: 181 IDKHDVLIAISFTPYGQETQACVRLAHHRQARTLVITDSQLSPLARHASVLLKVKESSAF 240

Query: 159 APTSDAAALILIQALCDAVAHRARRSVQAA 188
           +  S   A+ L QAL  A+A+R    V+ A
Sbjct: 241 SFRSLTNAMCLSQALFIALAYRMELDVEEA 270


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.129    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 695,438
Number of extensions: 27138
Number of successful extensions: 119
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 3
Length of query: 232
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 150
Effective length of database: 1,231,600
Effective search space: 184740000
Effective search space used: 184740000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)