BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0178.p
         (325 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311167|ref|YP_003775259.1| peptidase T2, asparaginase 2 pr...   605   e-174

>gi|300311167|ref|YP_003775259.1| peptidase T2, asparaginase 2
           protein [Herbaspirillum seropedicae SmR1]
          Length = 328

 Score =  605 bits (1560), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 304/328 (92%), Positives = 310/328 (94%), Gaps = 3/328 (0%)

Query: 1   MTTPVIAIHGGAGTITRASLSAEDEARYHQALSDIVAAGQAVLNAGGSALEAVTEAVRLL 60
           MT PVIAIHGGAGTITRASL+AEDEARYHQAL+DIVAAGQAVLNAGGSALEAVTEAVRLL
Sbjct: 1   MTIPVIAIHGGAGTITRASLTAEDEARYHQALADIVAAGQAVLNAGGSALEAVTEAVRLL 60

Query: 61  EDCPLFNAGHGAVYTSEGKHELDACVMNGADLASGAVACVTNLRNPILAARTVMEKSEHV 120
           EDCPLFNAGHGAVYTSEGKHELDACVMNG DLASGAVACVTNLRNP+LAARTVME SEHV
Sbjct: 61  EDCPLFNAGHGAVYTSEGKHELDACVMNGTDLASGAVACVTNLRNPVLAARTVMEHSEHV 120

Query: 121 LLVGPAAEAFAARHGAVTVEPDYFHTDARHEQWQRVRGQSRAMLDHDASSFAFAEKAAEP 180
           LLVGPAAE+FAARHGAVTVEP YFHTDARHEQW RVRGQSRAMLDHDASSFAFAEKAA P
Sbjct: 121 LLVGPAAESFAARHGAVTVEPGYFHTDARHEQWLRVRGQSRAMLDHDASSFAFAEKAAAP 180

Query: 181 KEPIDPDNKFGTVGAVALDQFGNLAAATSTGGITNKX---VGDSPIIGAGCYANNATVAV 237
            EPIDPD+KFGTVGAVALDQFGNLAAATSTGGITNK    VGDSPIIGAGCYANNATVAV
Sbjct: 181 TEPIDPDHKFGTVGAVALDQFGNLAAATSTGGITNKQPGRVGDSPIIGAGCYANNATVAV 240

Query: 238 SATGTGEAFMRTAACYDIGARMAYAGQSLEEASRAVVFETLPKVGGRGGVIAIDRHGNLA 297
           SATGTGEAFMRTAACYDI ARMAYAGQSLE AS AVVFETLPKVGGRGGVIAID  GNLA
Sbjct: 241 SATGTGEAFMRTAACYDIAARMAYAGQSLEAASHAVVFETLPKVGGRGGVIAIDGQGNLA 300

Query: 298 LPFNTEGMYRAWGCGELAPVTAIYAAPA 325
           LPFNTEGMYRA+G GELAPVTAIYAA A
Sbjct: 301 LPFNTEGMYRAYGRGELAPVTAIYAAQA 328


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.131    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,039,322
Number of extensions: 42668
Number of successful extensions: 167
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 240
Effective length of database: 1,217,395
Effective search space: 292174800
Effective search space used: 292174800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)