BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0173.p
         (346 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311172|ref|YP_003775264.1| L-aminopeptidase/D-esterase [He...   575   e-165

>gi|300311172|ref|YP_003775264.1| L-aminopeptidase/D-esterase
           [Herbaspirillum seropedicae SmR1]
          Length = 341

 Score =  575 bits (1482), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 292/337 (86%), Positives = 305/337 (90%)

Query: 10  VPHIGRLPAGARNSITDVEGVRVGHCTLDAGAVQTGVTVIAPHGGNLFTHKLPAAAAVIN 69
           VPHIGRLPAG RNSITDV GVRVGHCTLD GAVQTGVTVIAPH GNLFTHKLPAA AVIN
Sbjct: 5   VPHIGRLPAGPRNSITDVAGVRVGHCTLDDGAVQTGVTVIAPHPGNLFTHKLPAAVAVIN 64

Query: 70  GFGKSAGLVQLEELGLLETPIALSNTFAVGTLLNAQIAHTVRGNPECGRSLPTVNGLVLE 129
           GFGKSAGLVQLEELG LETPIALSNTFAVG LL AQI HT+R NPECGRSLPTVN LVLE
Sbjct: 65  GFGKSAGLVQLEELGTLETPIALSNTFAVGALLEAQIRHTLRANPECGRSLPTVNPLVLE 124

Query: 130 CNDGYLNDLQAMAVQPSHFEAAMAALSVEVLQGAVGAGRGMSSFGLKGGIGTASRVATLE 189
           CNDGYLNDLQ MAVQ +HFEAA+ ALS EV+QGAVGAGRGMSSF LKGGIGTASR   L 
Sbjct: 125 CNDGYLNDLQRMAVQAAHFEAALQALSEEVVQGAVGAGRGMSSFELKGGIGTASRCVVLG 184

Query: 190 SSGQSYTVGALVLSNFGRLPELILAGDPLGARLAASETPDTAPEKGSIIMILATDAPLDA 249
            + Q +TVGALVLSNFGRLPELILAG+PLGA+LA     D+APEKGSIIMILATDAPLDA
Sbjct: 185 KAAQGFTVGALVLSNFGRLPELILAGEPLGAQLAGQGGSDSAPEKGSIIMILATDAPLDA 244

Query: 250 RQLKRLATRAGAGLARTGSAYGHGSGDIALAFSTAQTIEAEADCLHLALLADHLLDPLFH 309
           RQLKRLATRAGAGLARTGSAYGHGSGDIALAFSTAQ IE+EADC+ +ALLADHLLDPLFH
Sbjct: 245 RQLKRLATRAGAGLARTGSAYGHGSGDIALAFSTAQQIESEADCVQMALLADHLLDPLFH 304

Query: 310 AAADCVEQAIVHALFAAETVRGRDGHVRMSLRERLAS 346
           AAAD VEQAIVHAL AA+TVRGRDGHVRMSLRERLAS
Sbjct: 305 AAADSVEQAIVHALLAAQTVRGRDGHVRMSLRERLAS 341


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 962,242
Number of extensions: 36860
Number of successful extensions: 154
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 260
Effective length of database: 1,212,660
Effective search space: 315291600
Effective search space used: 315291600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)