BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0172.p
         (280 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311173|ref|YP_003775265.1| D-aminopeptidase [Herbaspirillu...   531   e-152

>gi|300311173|ref|YP_003775265.1| D-aminopeptidase [Herbaspirillum
           seropedicae SmR1]
          Length = 280

 Score =  531 bits (1369), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 258/280 (92%), Positives = 265/280 (94%)

Query: 1   MNKRANILVSVDIEGVAGVFHTEQTRAGNGEYERARRWMTEEANAVIRGALAAGATAIKV 60
           M+KRANILVSVDIEGVAGVFH EQTRAGNGEYERARRWMTEEANAVIRGALAAGATAIKV
Sbjct: 1   MSKRANILVSVDIEGVAGVFHPEQTRAGNGEYERARRWMTEEANAVIRGALAAGATAIKV 60

Query: 61  NDSHGGFRNLLPDLLHPQARMVLGKPRVLGMMGGVDHDIDAVMLVGYHSRAQGRGILAHT 120
           NDSHGGFRNLLPDLLHPQARMVLGKPRVLGMMGGVDHDIDAVMLVGYHSRAQGRGILAHT
Sbjct: 61  NDSHGGFRNLLPDLLHPQARMVLGKPRVLGMMGGVDHDIDAVMLVGYHSRAQGRGILAHT 120

Query: 121 TNSFAFARVWLGGQELGEAGLYGALAAEHGVPVIFGSGDDAFIEENQPLFPHAIFAETKK 180
           TNSFAFARVWL GQE+GEAGLYGALAAEHG PVIFGSGDDAFIEENQPLF HA+FAETKK
Sbjct: 121 TNSFAFARVWLDGQEMGEAGLYGALAAEHGAPVIFGSGDDAFIEENQPLFAHAVFAETKK 180

Query: 181 AYGANSGDSLTPQQSCVLLEERARQAVTALVANPAAMPVLPLRGPLRCRLQAQTVALTDL 240
           AYGANSGDSLTPQQSC LLE RA+QAV   +A+P  MP  PLRGPLRCRLQAQTVAL DL
Sbjct: 181 AYGANSGDSLTPQQSCTLLEARAQQAVATWLADPQTMPARPLRGPLRCRLQAQTVALADL 240

Query: 241 FSQLPILERTDNVTVEFDAPTAEYAVRVLNSLSAMSAMLR 280
           FSQLPILER DNV+VEFDAPTAEYAVRVLNSLSAMSAMLR
Sbjct: 241 FSQLPILERCDNVSVEFDAPTAEYAVRVLNSLSAMSAMLR 280


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 814,050
Number of extensions: 32046
Number of successful extensions: 125
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 196
Effective length of database: 1,222,130
Effective search space: 239537480
Effective search space used: 239537480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)