BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0166.p (325 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter AT... 291 5e-80 gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbasp... 276 2e-75 gi|300312477|ref|YP_003776569.1| oligopeptide ABC transporter AT... 241 7e-65 gi|300310466|ref|YP_003774558.1| dipeptide/oligopeptide/nickel A... 209 2e-55 gi|300310895|ref|YP_003774987.1| dipeptide/oligopeptide/nickel A... 206 3e-54 >gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 335 Score = 291 bits (745), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 144/291 (49%), Positives = 199/291 (68%), Gaps = 2/291 (0%) Query: 26 AVDDVSFSLAEGQTLGLVGESGCGKSTTGRSVLRLIEPSEGSVRFMGQELTLLPEGQLRA 85 A+D V + G+ +GLVGESGCGKST GR L++PS+G V G++ L + Sbjct: 44 ALDKVDLKVLPGEVVGLVGESGCGKSTLGRVACGLLDPSDGQVLVNGRDRASLSSREEAE 103 Query: 86 MRRHMQMVFQDPYASLNPRMTIGEVLEEPLIVHQLHDRATRKRKVAEALDMVGLNPAYAA 145 R +QM+FQ+PYASLNPR+ I +++ E V+ + V + L GL+PA Sbjct: 104 ARLQVQMIFQNPYASLNPRLRIDQIVGEAAQVNGKVE-GDLDDYVCQQLLRAGLDPALRD 162 Query: 146 RHPHEFSGGQRQRVGIARAIITRPKLVVADEAVSALDVSIQAQILNLLRELQQELGLTYL 205 R+PH+FSGGQRQR+GIARA+ +P+++V DEAV+ALDVSIQAQILNL +L+ ELGLTYL Sbjct: 163 RYPHQFSGGQRQRIGIARALAVQPQMLVCDEAVAALDVSIQAQILNLFMDLRAELGLTYL 222 Query: 206 FVSHDLAVIRHVSDTIGVMYLGRMVESGTCEEVYTRPRHPYTQALLSAIPREHPRQQRER 265 F+SHDL V+ HVSD + +MYLGR+VES E++ +P HPYTQALL+ +PR R ++E Sbjct: 223 FISHDLGVVEHVSDRVVIMYLGRVVESAPVAELFGQPNHPYTQALLAEVPRMGAR-KKEF 281 Query: 266 IILQGSIPNPAAPPSGCHFHPRCPSCMEVCKTEAPPAVKVSATHTVACHLS 316 ++G IP+P PP+GCHF+PRCP + C+ E P +++ H ACHL+ Sbjct: 282 TAIKGEIPSPLNPPTGCHFNPRCPHATQRCREEQPLLREIAPGHMSACHLN 332 >gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 617 Score = 276 bits (705), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 138/278 (49%), Positives = 195/278 (70%), Gaps = 10/278 (3%) Query: 6 PLLEVHGLKKYFASGSST-------VKAVDDVSFSLAEGQTLGLVGESGCGKSTTGRSVL 58 P+L+V L F S V AV+ VSF L G+TL +VGESGCGKSTTGRS+L Sbjct: 311 PILKVRDLTTRFDVKSGIFGRVRQRVHAVEKVSFDLYAGETLAIVGESGCGKSTTGRSLL 370 Query: 59 RLIEPSEGSVRFMGQELTLLPEGQLRAMRRHMQMVFQDPYASLNPRMTIGEVLEEPLIVH 118 RL++ + G V F G++L LP +LR +RR +Q +FQDP+ASL+PRMT+G + EP++VH Sbjct: 371 RLVDIAGGKVEFGGRDLAQLPRSELRQLRRDIQFIFQDPFASLDPRMTVGYSIMEPMLVH 430 Query: 119 QLHDRATRKRKVAEALDMVGLNPAYAARHPHEFSGGQRQRVGIARAIITRPKLVVADEAV 178 + + A + +V L VGL P + R+PHEFSGGQRQR+ IARA+ PK+V+ADE+V Sbjct: 431 GMKEGA--QERVDALLTRVGLTPEHGQRYPHEFSGGQRQRICIARALALNPKIVIADESV 488 Query: 179 SALDVSIQAQILNLLRELQQELGLTYLFVSHDLAVIRHVSDTIGVMYLGRMVESGTCEEV 238 SALDVSIQAQI+NL+ +LQ ELG++++F+SHD+AV+ +S + VMYLG++VE G + Sbjct: 489 SALDVSIQAQIVNLMLDLQAELGISFIFISHDMAVVERISHRVAVMYLGQIVEIGPRRAI 548 Query: 239 YTRPRHPYTQALLSAIPREHPR-QQRERIILQGSIPNP 275 + P+HPYT+ L++A+P P +Q + +L IP+P Sbjct: 549 FENPQHPYTRKLMAAVPVADPTLRQPGKKLLTDEIPSP 586 Score = 201 bits (511), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 116/287 (40%), Positives = 174/287 (60%), Gaps = 13/287 (4%) Query: 7 LLEVHGLKKYFASGSSTVKAVDDVSFSLAEGQTLGLVGESGCGKSTTGRSVLRLIE---- 62 +L+V+ L F++ TV AV D+SF + +G+TL +VGESG GKS + +++RLIE Sbjct: 7 VLDVNHLSVRFSTSERTVDAVRDLSFHVDQGETLAIVGESGSGKSVSSLAIMRLIEHGGG 66 Query: 63 -PSEGSVRFM---GQELTLL--PEGQLRAMR-RHMQMVFQDPYASLNPRMTIGEVLEEPL 115 + GS++F+ GQ L L +R++R + M+FQ+P SLNP T+GE + E + Sbjct: 67 KIASGSMQFLRRSGQRLDLAQADNATMRSIRGAEIAMIFQEPMTSLNPVFTVGEQIAESI 126 Query: 116 IVHQLHDRATRKRKVAEALDMVGLNPA--YAARHPHEFSGGQRQRVGIARAIITRPKLVV 173 +HQ RA + + L+MV + A RHPH+ SGG RQRV IA A+ +P L++ Sbjct: 127 RLHQGLGRAAAQAEALRMLEMVRIPEAKRVLGRHPHQLSGGMRQRVMIAMALSCKPSLLI 186 Query: 174 ADEAVSALDVSIQAQILNLLRELQQELGLTYLFVSHDLAVIRHVSDTIGVMYLGRMVESG 233 ADE +ALDV+IQAQIL L+R LQQE+ + +F++HD+ V+ V+D + VM G VE Sbjct: 187 ADEPTTALDVTIQAQILQLIRSLQQEMQMGVIFITHDMGVVAEVADRVVVMCRGEKVEEN 246 Query: 234 TCEEVYTRPRHPYTQALLSAIPREHPRQQRERIILQGSIPNPAAPPS 280 ++ P HPYTQ+LL+A+PR + ++ + G P A P Sbjct: 247 AVNPLFAAPAHPYTQSLLAAVPRLGSMRGTDKPLRFGIAPQAEARPD 293 >gi|300312477|ref|YP_003776569.1| oligopeptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 280 Score = 241 bits (614), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 121/247 (48%), Positives = 173/247 (70%), Gaps = 3/247 (1%) Query: 7 LLEVHGLKKYFASGSSTVKAVDDVSFSLAEGQTLGLVGESGCGKSTTGRSVLRLIEPSEG 66 L +V+ LK+ +KAV+DVS L G+TLGLVGESGCGKST + +L L+ P+ G Sbjct: 21 LTKVYPLKRGLFQPPGQLKAVNDVSLRLYRGETLGLVGESGCGKSTLAKMLLGLLPPTSG 80 Query: 67 SVRFMGQELTLLPEGQLRAMRRHMQMVFQDPYASLNPRMTIGEVLEEPLIVHQLHDRATR 126 +V GQE+ + +A RH+Q +FQDPY+SLNPR T+ E++ PL +H + + A R Sbjct: 81 NVLINGQEVD---PTERKAHARHIQPIFQDPYSSLNPRKTVAEIVGLPLKLHGIGNAAER 137 Query: 127 KRKVAEALDMVGLNPAYAARHPHEFSGGQRQRVGIARAIITRPKLVVADEAVSALDVSIQ 186 R+V + LD+VG+ A++P++ SGGQRQRV IARA+I RP +++ DE SALDVS+Q Sbjct: 138 NRQVKDILDLVGMPERTHAQYPNQLSGGQRQRVAIARALILRPDILICDEPTSALDVSVQ 197 Query: 187 AQILNLLRELQQELGLTYLFVSHDLAVIRHVSDTIGVMYLGRMVESGTCEEVYTRPRHPY 246 AQILNLL +L+ E GLTYLF+SHDL V+ H+ D + VM G +VE + E++++ P+H Y Sbjct: 198 AQILNLLLDLKAEFGLTYLFISHDLGVVEHLVDRVAVMNQGSIVELQSREQLFSEPQHLY 257 Query: 247 TQALLSA 253 T+ LL++ Sbjct: 258 TRMLLAS 264 >gi|300310466|ref|YP_003774558.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 645 Score = 209 bits (532), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 124/326 (38%), Positives = 185/326 (56%), Gaps = 13/326 (3%) Query: 6 PLLEVHGLKKYFAS----GSSTVKAVDDVSFSLAEGQTLGLVGESGCGKSTTGRSVLRLI 61 PLL + GL + + G V+ +DD++ ++ G T+G++GESG GK+T R+V +I Sbjct: 307 PLLRISGLVAGYGAPDRLGLPGVRILDDINLTIQRGSTVGIIGESGSGKTTLARAVAGMI 366 Query: 62 EPSEGSVRFMGQELTLLPEGQLRAMRRHMQMVFQDPYASLNPRMTIGEVLEEPL-IVHQL 120 P+ GS++ G+ L+ EG+ R R +Q+VFQ+ +LNP +IG +L PL H L Sbjct: 367 APARGSIQLDGETLSPTLEGRTREQFRRVQIVFQNADTALNPSHSIGRILNRPLSFYHGL 426 Query: 121 HDRATRKRKVAEALDMVGLNPAYAARHPHEFSGGQRQRVGIARAIITRPKLVVADEAVSA 180 A R R+ AE LD+V L R P E SGGQ+QRV +ARA+ +P L++ DE SA Sbjct: 427 KGEAMR-RRTAELLDLVQLPATVIDRLPAELSGGQKQRVNLARALAAKPDLILCDEVTSA 485 Query: 181 LDVSIQAQILNLLRELQQELGLTYLFVSHDLAVIRHVSDTIGVMYLGRMVESGTCEEVYT 240 LD + A IL LL EL++EL ++Y+F+SHD++ +R + D I V+Y GRMV + E + Sbjct: 486 LDTVVAAAILELLAELRRELQVSYMFISHDISTVRAICDDIVVLYAGRMVANRPREAMMA 545 Query: 241 RPRHPYTQALLSAIPREHPRQQRERIILQG--SIPNPAA---PPSGCHFHPRCPSCME-V 294 P HPY+ LLS++P + E++ G +P A P C F PRC ++ V Sbjct: 546 PPYHPYSHLLLSSVPAMQ-QGWLEQVAGAGQHKLPPIGAVDPSPDICAFLPRCAQRVDGV 604 Query: 295 CKTEAPPAVKVSATHTVACHLSRPEL 320 C P + + CH S +L Sbjct: 605 CNVVPPRRRNMEHGGEILCHRSDADL 630 Score = 152 bits (384), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 107/285 (37%), Positives = 160/285 (56%), Gaps = 11/285 (3%) Query: 4 LPPLLEVHGLK-KYFASGSSTVKAVDDVSFSLAEGQTLGLVGESGCGKSTTGRSVLRLIE 62 L PL+EV GL+ S V+ V +V+F++A G+ L L+GESG GK+T S+L Sbjct: 25 LRPLVEVQGLRVNARKEDGSQVEIVKNVNFTVARGEVLALIGESGSGKTTIALSLLGYAR 84 Query: 63 P----SEGSVRFMGQELTLLPEGQLRAMR-RHMQMVFQDPYASLNPRMTIGEVLEEPLIV 117 + G VR +++ + E L AMR H+ + Q A+ NP T+ + + E + Sbjct: 85 AGCHIAGGQVRIGERQIDQMDEKALLAMRGHHVAYIAQSAAAAFNPARTLMDQVIESALQ 144 Query: 118 HQLHDRATRKRKVAEALDMVGL-NP-AYAARHPHEFSGGQRQRVGIARAIITRPKLVVAD 175 H + D+A+ RK E + L NP R+PH+ SGGQ QRV A A++T P+LV+ D Sbjct: 145 HGVMDKASAMRKAVELFRALALPNPDKIGERYPHQVSGGQLQRVMAAMALVTGPELVILD 204 Query: 176 EAVSALDVSIQAQILNLLRELQQELGLTYLFVSHDLAVIRHVSDTIGVMYLGRMVESGTC 235 E +ALDV+ Q ++L + + +ELG T ++VSHDLAV+ ++D I V+ G + E+G+ Sbjct: 205 EPTTALDVTTQIEVLRAFKNVVKELGTTAVYVSHDLAVVAQMADRIIVLRDGAVRETGST 264 Query: 236 EEVYTRPRHPYTQALLSAI-PREHPRQQRERIILQGSIPNPAAPP 279 +V P YTQ LL+A P Q RE IL ++P A P Sbjct: 265 SQVLHAPADSYTQCLLAAASPAARVVQLRE--ILPATLPAEARAP 307 >gi|300310895|ref|YP_003774987.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 330 Score = 206 bits (523), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 118/314 (37%), Positives = 184/314 (58%), Gaps = 9/314 (2%) Query: 8 LEVHGLKKYFASGSSTVKAVDDVSFSLAEGQTLGLVGESGCGKSTTGRSVLRLIE-PSE- 65 LEV L+ +F + + AVDDVS S+ G+ LGLVGESG GKS TG S+L +++ P Sbjct: 6 LEVRNLRTHFFTPEGVLPAVDDVSLSVGRGRILGLVGESGSGKSVTGFSILGMVDAPGRI 65 Query: 66 --GSVRFMGQELTLLPEGQLRAMR-RHMQMVFQDPYASLNPRMTIGEVLEEPLIVHQLHD 122 G + F G++L + + LR ++ + M+FQDP +LNP + + + + ++ H Sbjct: 66 VGGEILFQGRDLVRMDKTSLRELQGNRIAMIFQDPMMTLNPVLKVEAQMVDAVLAHSKVS 125 Query: 123 RATRKRKVAEALDMVGL-NPAYAAR-HPHEFSGGQRQRVGIARAIITRPKLVVADEAVSA 180 R + + L M+G+ +P + +PH+ SGG RQRV IA A++ +P L++ADE +A Sbjct: 126 RQQARELARDTLGMMGIASPEERLQAYPHQLSGGMRQRVAIAIAMLHKPDLIIADEPTTA 185 Query: 181 LDVSIQAQILNLLRELQQELGLTYLFVSHDLAVIRHVSDTIGVMYLGRMVESGTCEEVYT 240 LDV+IQAQIL+ +++L ++ G ++++HDL+V+ ++D + VMY GR+VE G+ + V Sbjct: 186 LDVTIQAQILSEVQKLARQHGTALIWITHDLSVVAGLADEVAVMYAGRIVEQGSVDAVLD 245 Query: 241 RPRHPYTQALLSAIPREHPRQQRERIILQGSIPNPAAPPSGCHFHPRCPSCMEVCKTEAP 300 P HPYTQ L+ ++P + R R R I G PN P C F RC + C AP Sbjct: 246 APLHPYTQGLIGSLPSNNRRGARLRQI-PGMTPNLLHLPPTCAFAARCERLSQQCLV-AP 303 Query: 301 PAVKVSATHTVACH 314 + H V C+ Sbjct: 304 AISEPLPAHRVRCY 317 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,023,997 Number of extensions: 43225 Number of successful extensions: 484 Number of sequences better than 1.0e-08: 122 Number of HSP's gapped: 347 Number of HSP's successfully gapped: 131 Length of query: 325 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 240 Effective length of database: 1,217,395 Effective search space: 292174800 Effective search space used: 292174800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)