BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0165.p (319 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbasp... 266 2e-72 gi|300312478|ref|YP_003776570.1| dipeptide/oligopeptide/nickel A... 266 2e-72 gi|300310895|ref|YP_003774987.1| dipeptide/oligopeptide/nickel A... 245 4e-66 gi|300312716|ref|YP_003776808.1| ABC transporter duplicated ATPa... 224 5e-60 gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter AT... 206 1e-54 >gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 617 Score = 266 bits (680), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 140/269 (52%), Positives = 189/269 (70%), Gaps = 5/269 (1%) Query: 1 MLTIENLKIEFLSHGRRVAPVDGVSFSLGQDETVGLLGESGCGKSVTALSILRLFPMASQ 60 +L + +L + F + R V V +SF + Q ET+ ++GESG GKSV++L+I+RL Sbjct: 7 VLDVNHLSVRFSTSERTVDAVRDLSFHVDQGETLAIVGESGSGKSVSSLAIMRLIEHGGG 66 Query: 61 ARLSGAIRF----GER-DLLQADDATLRGIRGKEIAMIFQEPMTSLNPLHRIGEQLGEML 115 SG+++F G+R DL QAD+AT+R IRG EIAMIFQEPMTSLNP+ +GEQ+ E + Sbjct: 67 KIASGSMQFLRRSGQRLDLAQADNATMRSIRGAEIAMIFQEPMTSLNPVFTVGEQIAESI 126 Query: 116 RIHTALPRQEIDAKVVAMLERVGLSRAAQLVDEYPHSLSGGMRQRVMIAMALLCQPRLLV 175 R+H L R A+ + MLE V + A +++ +PH LSGGMRQRVMIAMAL C+P LL+ Sbjct: 127 RLHQGLGRAAAQAEALRMLEMVRIPEAKRVLGRHPHQLSGGMRQRVMIAMALSCKPSLLI 186 Query: 176 CDEPTTALDVTIQAQILDLMRDLKREQKTSILMITHDLGVVAEMCQRVVVMYAGQVVEQS 235 DEPTTALDVTIQAQIL L+R L++E + ++ ITHD+GVVAE+ RVVVM G+ VE++ Sbjct: 187 ADEPTTALDVTIQAQILQLIRSLQQEMQMGVIFITHDMGVVAEVADRVVVMCRGEKVEEN 246 Query: 236 SVEDLFDRPAHPYTHALMRARPALDATPG 264 +V LF PAHPYT +L+ A P L + G Sbjct: 247 AVNPLFAAPAHPYTQSLLAAVPRLGSMRG 275 Score = 192 bits (487), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 113/265 (42%), Positives = 156/265 (58%), Gaps = 15/265 (5%) Query: 16 RRVAPVDGVSFSLGQDETVGLLGESGCGKSVTALSILRLFPMASQARLSGAIRFGERDLL 75 +RV V+ VSF L ET+ ++GESGCGKS T S+LRL +A G + FG RDL Sbjct: 334 QRVHAVEKVSFDLYAGETLAIVGESGCGKSTTGRSLLRLVDIAG-----GKVEFGGRDLA 388 Query: 76 QADDATLRGIRGKEIAMIFQEPMTSLNPLHRIGEQLGEMLRIHTALPRQEIDAKVVAMLE 135 Q + LR +R ++I IFQ+P SL+P +G + E + +H ++ +V A+L Sbjct: 389 QLPRSELRQLR-RDIQFIFQDPFASLDPRMTVGYSIMEPMLVHGM--KEGAQERVDALLT 445 Query: 136 RVGLSRAAQLVDEYPHSLSGGMRQRVMIAMALLCQPRLLVCDEPTTALDVTIQAQILDLM 195 RVGL+ + YPH SGG RQR+ IA AL P++++ DE +ALDV+IQAQI++LM Sbjct: 446 RVGLT--PEHGQRYPHEFSGGQRQRICIARALALNPKIVIADESVSALDVSIQAQIVNLM 503 Query: 196 RDLKREQKTSILMITHDLGVVAEMCQRVVVMYAGQVVEQSSVEDLFDRPAHPYTHALMRA 255 DL+ E S + I+HD+ VV + RV VMY GQ+VE +F+ P HPYT LM A Sbjct: 504 LDLQAELGISFIFISHDMAVVERISHRVAVMYLGQIVEIGPRRAIFENPQHPYTRKLMAA 563 Query: 256 RPALDAT---PGAPLTAIPGSVPPP 277 P D T PG L + +P P Sbjct: 564 VPVADPTLRQPGKKL--LTDEIPSP 586 >gi|300312478|ref|YP_003776570.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 334 Score = 266 bits (679), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 145/320 (45%), Positives = 199/320 (62%), Gaps = 6/320 (1%) Query: 1 MLTIENLKIEFLSHGRRVAPVDGVSFSLGQDETVGLLGESGCGKSVTALSILRLFPMASQ 60 +L ++NLK++ + + V G+ F + + E + L+GESGCGKS+T+L+++ L P +Q Sbjct: 4 LLDVKNLKVDLPTENGMLHAVRGIDFQVRRGEMLCLVGESGCGKSMTSLALMGLLPRKAQ 63 Query: 61 ARLSGAIRFGERDLLQADDATLRGIRGKEIAMIFQEPMTSLNPLHRIGEQLGEMLRIHTA 120 + I F DL D L +RGK +AMIFQEPMTSLNP + +G QL E + Sbjct: 64 CS-ADHILFDGVDLHGMPDKQLMQLRGKRMAMIFQEPMTSLNPSYTLGNQLCEAMLQQPG 122 Query: 121 LPRQEIDAKVVAMLERVGLSRAAQLVDEYPHSLSGGMRQRVMIAMALLCQPRLLVCDEPT 180 + R E + + +L R G+S A + +YPH LSGG+RQRVMIAM+L+C P L++ DEPT Sbjct: 123 VSRAEARERALYLLHRTGISNAEDRLRQYPHQLSGGLRQRVMIAMSLMCNPDLIIADEPT 182 Query: 181 TALDVTIQAQILDLMRDLKREQKTSILMITHDLGVVAEMCQRVVVMYAGQVVEQSSVEDL 240 TALDVTIQAQIL ++R+L++E +++ ITHDLGVV+ + RV VMYAGQVVE + V L Sbjct: 183 TALDVTIQAQILRMIRELQQEFGAAVIFITHDLGVVSRIADRVAVMYAGQVVETTDVAQL 242 Query: 241 FDRPAHPYTHALMRARPALDAT-PGAPLTAIPGSVPPPGTVTQGCRFAARCARAQDICRQ 299 F +P HPYT L+ P T PG+ L AIPG VP GC F RCA+A C + Sbjct: 243 FAQPRHPYTQGLLNCIPVRGKTLPGSHLQAIPGVVPSLVGQVSGCAFRNRCAKADSGCER 302 Query: 300 EMPALENLGD---GHSVRCW 316 + P + G H RC Sbjct: 303 D-PQMVQQGSVTAPHQARCL 321 >gi|300310895|ref|YP_003774987.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 330 Score = 245 bits (625), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 137/317 (43%), Positives = 193/317 (60%), Gaps = 3/317 (0%) Query: 2 LTIENLKIEFLSHGRRVAPVDGVSFSLGQDETVGLLGESGCGKSVTALSILRLFPMASQA 61 L + NL+ F + + VD VS S+G+ +GL+GESG GKSVT SIL + + Sbjct: 6 LEVRNLRTHFFTPEGVLPAVDDVSLSVGRGRILGLVGESGSGKSVTGFSILGMVDAPGRI 65 Query: 62 RLSGAIRFGERDLLQADDATLRGIRGKEIAMIFQEPMTSLNPLHRIGEQLGEMLRIHTAL 121 + G I F RDL++ D +LR ++G IAMIFQ+PM +LNP+ ++ Q+ + + H+ + Sbjct: 66 -VGGEILFQGRDLVRMDKTSLRELQGNRIAMIFQDPMMTLNPVLKVEAQMVDAVLAHSKV 124 Query: 122 PRQEIDAKVVAMLERVGLSRAAQLVDEYPHSLSGGMRQRVMIAMALLCQPRLLVCDEPTT 181 RQ+ L +G++ + + YPH LSGGMRQRV IA+A+L +P L++ DEPTT Sbjct: 125 SRQQARELARDTLGMMGIASPEERLQAYPHQLSGGMRQRVAIAIAMLHKPDLIIADEPTT 184 Query: 182 ALDVTIQAQILDLMRDLKREQKTSILMITHDLGVVAEMCQRVVVMYAGQVVEQSSVEDLF 241 ALDVTIQAQIL ++ L R+ T+++ ITHDL VVA + V VMYAG++VEQ SV+ + Sbjct: 185 ALDVTIQAQILSEVQKLARQHGTALIWITHDLSVVAGLADEVAVMYAGRIVEQGSVDAVL 244 Query: 242 DRPAHPYTHALMRARPALDATPGAPLTAIPGSVPPPGTVTQGCRFAARCARAQDICRQEM 301 D P HPYT L+ + P+ + GA L IPG P + C FAARC R C Sbjct: 245 DAPLHPYTQGLIGSLPS-NNRRGARLRQIPGMTPNLLHLPPTCAFAARCERLSQQCLVA- 302 Query: 302 PALENLGDGHSVRCWYP 318 PA+ H VRC++P Sbjct: 303 PAISEPLPAHRVRCYHP 319 >gi|300312716|ref|YP_003776808.1| ABC transporter duplicated ATPase [Herbaspirillum seropedicae SmR1] Length = 529 Score = 224 bits (572), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 119/257 (46%), Positives = 169/257 (65%), Gaps = 7/257 (2%) Query: 1 MLTIENLKIEFLSHGRRVAPVDGVSFSLGQDETVGLLGESGCGKSVTALSILRLFPMASQ 60 +L + NL + F G V VD VSF++ E L+GESG GK+V++L++++L Sbjct: 5 LLEVNNLTVRF---GDTVV-VDRVSFAIAPGEKFALVGESGSGKTVSSLAVMQL---NQD 57 Query: 61 ARLSGAIRFGERDLLQADDATLRGIRGKEIAMIFQEPMTSLNPLHRIGEQLGEMLRIHTA 120 AR G+I +D+L + ++ +RG ++AMIFQEPMT+LNPL IG Q+ E+L H Sbjct: 58 ARYEGSILLDGQDVLAKSERQMQQVRGNDVAMIFQEPMTALNPLFTIGNQIAEVLMHHEG 117 Query: 121 LPRQEIDAKVVAMLERVGLSRAAQLVDEYPHSLSGGMRQRVMIAMALLCQPRLLVCDEPT 180 L ++ + VA+LE+ G+ A+ YPH LSGG RQR MIAMAL C+P+LL+ DEPT Sbjct: 118 LNARDAARRAVALLEKTGIPEPARRALSYPHELSGGQRQRAMIAMALACKPKLLIADEPT 177 Query: 181 TALDVTIQAQILDLMRDLKREQKTSILMITHDLGVVAEMCQRVVVMYAGQVVEQSSVEDL 240 TALDVTIQ QIL L+ L+RE+ ++L+I+HDL +V RV VM G++VE +SV +L Sbjct: 178 TALDVTIQVQILALLNQLQREENMAVLIISHDLNLVRHFADRVGVMEKGKLVESASVAEL 237 Query: 241 FDRPAHPYTHALMRARP 257 F P PYT L+++RP Sbjct: 238 FANPQQPYTRKLLQSRP 254 Score = 158 bits (399), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 100/241 (41%), Positives = 147/241 (60%), Gaps = 12/241 (4%) Query: 16 RRVAPVDGVSFSLGQDETVGLLGESGCGKSVTALSILRLFPMASQARLSGAIRFGERDLL 75 R VDGV L + ET+G++GESG GKS +++LRL S A ++G+IRF + Sbjct: 288 RAFHAVDGVDLQLRRGETLGIVGESGSGKSTLGMALLRL----SAASVAGSIRFDGVPIS 343 Query: 76 QADDATLRGIRGKEIAMIFQEPMTSLNPLHRIGEQLGEMLRIHTALPRQEIDAK---VVA 132 + LR +R + + ++FQ+P SL+P + + +GE L +H P + + + +VA Sbjct: 344 ERPQRELRPLRSR-MQVVFQDPFASLSPRRTVEQIVGEGLELHH--PDRSAEQQRQAIVA 400 Query: 133 MLERVGLSRAAQLVDEYPHSLSGGMRQRVMIAMALLCQPRLLVCDEPTTALDVTIQAQIL 192 LE VGLS A +++ YPH SGG RQR+ IA AL+ QP LL+ DEPT+ALDVT+Q Q+L Sbjct: 401 ALEEVGLS--AAVLERYPHEFSGGQRQRIAIARALVLQPELLLLDEPTSALDVTVQQQVL 458 Query: 193 DLMRDLKREQKTSILMITHDLGVVAEMCQRVVVMYAGQVVEQSSVEDLFDRPAHPYTHAL 252 L+ +L+R + L ITHDL VV M +V+VM G+VVE + + +P YT L Sbjct: 459 QLLAELQRRHGLAYLFITHDLAVVQAMAHQVIVMKDGKVVESGATAQVLQQPQQEYTRRL 518 Query: 253 M 253 + Sbjct: 519 V 519 >gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 335 Score = 206 bits (525), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 127/296 (42%), Positives = 165/296 (55%), Gaps = 12/296 (4%) Query: 21 VDGVSFSLGQDETVGLLGESGCGKSVTA-LSILRLFPMASQARLSGAIRFGERDLLQADD 79 +D V + E VGL+GESGCGKS ++ L P Q ++G R L ++ Sbjct: 45 LDKVDLKVLPGEVVGLVGESGCGKSTLGRVACGLLDPSDGQVLVNGRDRA---SLSSREE 101 Query: 80 ATLRGIRGKEIAMIFQEPMTSLNPLHRIGEQLGEMLRIHTALPRQEIDAKVVAMLERVGL 139 A R ++ MIFQ P SLNP RI + +GE +++ + ++D V L R GL Sbjct: 102 AEAR----LQVQMIFQNPYASLNPRLRIDQIVGEAAQVNGKV-EGDLDDYVCQQLLRAGL 156 Query: 140 SRAAQLVDEYPHSLSGGMRQRVMIAMALLCQPRLLVCDEPTTALDVTIQAQILDLMRDLK 199 A L D YPH SGG RQR+ IA AL QP++LVCDE ALDV+IQAQIL+L DL+ Sbjct: 157 DPA--LRDRYPHQFSGGQRQRIGIARALAVQPQMLVCDEAVAALDVSIQAQILNLFMDLR 214 Query: 200 REQKTSILMITHDLGVVAEMCQRVVVMYAGQVVEQSSVEDLFDRPAHPYTHALMRARPAL 259 E + L I+HDLGVV + RVV+MY G+VVE + V +LF +P HPYT AL+ P + Sbjct: 215 AELGLTYLFISHDLGVVEHVSDRVVIMYLGRVVESAPVAELFGQPNHPYTQALLAEVPRM 274 Query: 260 DATPGAPLTAIPGSVPPPGTVTQGCRFAARCARAQDICRQEMPALENLGDGHSVRC 315 A TAI G +P P GC F RC A CR+E P L + GH C Sbjct: 275 GARK-KEFTAIKGEIPSPLNPPTGCHFNPRCPHATQRCREEQPLLREIAPGHMSAC 329 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.137 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 993,202 Number of extensions: 40937 Number of successful extensions: 463 Number of sequences better than 1.0e-08: 113 Number of HSP's gapped: 334 Number of HSP's successfully gapped: 124 Length of query: 319 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 234 Effective length of database: 1,217,395 Effective search space: 284870430 Effective search space used: 284870430 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)