BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0156.p
         (209 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311181|ref|YP_003775273.1| molybdochelatase [Herbaspirillu...   376   e-106

>gi|300311181|ref|YP_003775273.1| molybdochelatase [Herbaspirillum
           seropedicae SmR1]
          Length = 209

 Score =  376 bits (965), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/208 (90%), Positives = 196/208 (94%), Gaps = 3/208 (1%)

Query: 1   MSVEAVTPIAREVLRVGLVSISDRASGGVYQDQGIPALQEWLSKALTSAFEVETRLIPDE 60
           MS EAV    REVLRVGLVSISDRASGGVYQDQGIPAL+EWL +AL SAFEV+TRLIPDE
Sbjct: 1   MSAEAVQ---REVLRVGLVSISDRASGGVYQDQGIPALEEWLGRALRSAFEVQTRLIPDE 57

Query: 61  RAQIEQTLVELVDVARCDLVLTTGGTGPSRRDVTPEATLAIGTKEMPGFGEQMRQISLQF 120
           RAQIEQT+VELVDVARCDLVLTTGGTGPSRRDVTPEATLAIGTKEMPGFGEQMRQISLQF
Sbjct: 58  RAQIEQTIVELVDVARCDLVLTTGGTGPSRRDVTPEATLAIGTKEMPGFGEQMRQISLQF 117

Query: 121 VPTAILSRQVAVIRETDGHAALVLNLPGQPKSIRETLEGLKDEDGKVKVPGIFAAIPYCI 180
           VPTAILSRQVAVIRET  HAALVLNLPGQPKSIRETLEGLKDEDGK +V GIFAAIPYCI
Sbjct: 118 VPTAILSRQVAVIRETADHAALVLNLPGQPKSIRETLEGLKDEDGKTRVAGIFAAIPYCI 177

Query: 181 DLIGGPYIDTDESVCKAFRPKSAIRPAS 208
           DLIGGPYI+TD++VCKAFRPKSAIRP S
Sbjct: 178 DLIGGPYIETDDAVCKAFRPKSAIRPTS 205


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 672,842
Number of extensions: 27232
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 128
Effective length of database: 1,236,335
Effective search space: 158250880
Effective search space used: 158250880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)