BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0152.p
         (530 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311186|ref|YP_003775278.1| deoxyribodipyrimidine photolyas...   896   0.0  
gi|300309758|ref|YP_003773850.1| deoxyribodipyrimidine photolyas...    69   7e-13

>gi|300311186|ref|YP_003775278.1| deoxyribodipyrimidine photolyase
           [Herbaspirillum seropedicae SmR1]
          Length = 494

 Score =  896 bits (2315), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/494 (88%), Positives = 457/494 (92%)

Query: 34  MPQFDKSLVWFRRDLRHTDHAALYYALSQSQSVWCVFVFDTDILDALKAEGVAQDRRVDF 93
           MPQFD+SLVWFRRDLR TDHAALYYALSQS+ VWCVFVFDTDIL ALKAEGV QDRR+DF
Sbjct: 1   MPQFDRSLVWFRRDLRMTDHAALYYALSQSRQVWCVFVFDTDILAALKAEGVTQDRRIDF 60

Query: 94  LLASVAELDEALRKAGGGLIVLHGAAASCIPELAAELDVQAVFVNTDYEPAAVERDAAVA 153
           LLASVAELDEALR AGGGLIVLHG+A + IP LAAELDVQAV+ NTDYEPAAVERDAAVA
Sbjct: 61  LLASVAELDEALRHAGGGLIVLHGSAVTQIPALAAELDVQAVYANTDYEPAAVERDAAVA 120

Query: 154 TALKKHGAQLLSYKDQVIFEKDEVLTQSAKPFSVFTPYKNAWMAKLAAADGDFYLKPYLV 213
             L K GAQLLSYKDQVIFEKDEVLTQSAKPFSVFTPYKNAWM+KLAAADGDF+LKPY V
Sbjct: 121 QTLAKSGAQLLSYKDQVIFEKDEVLTQSAKPFSVFTPYKNAWMSKLAAADGDFFLKPYPV 180

Query: 214 ENYFKALAKPPGKAHQGLPSHKALGFHPSNLQELKIPTGMSGAQALLEDFLGRIGAYGTA 273
           E Y  ALA PPGKA   LPSH+ LGF PSNLQELKIPTGMSGAQ+LL++FL RIG+YG A
Sbjct: 181 EKYLTALASPPGKAGHALPSHRQLGFAPSNLQELKIPTGMSGAQSLLDEFLDRIGSYGAA 240

Query: 274 RDFPAVKGPSYLSIHLRFGTVSIRTLARAAMQAMHAGQGAAGAAVWLSELTWRDFYFMIL 333
           RDFPAVKGPSYLS+HLRFGT+SIRTLARAAMQAMHAGQGAAGAAVWLSELTWRDFYFMIL
Sbjct: 241 RDFPAVKGPSYLSVHLRFGTISIRTLARAAMQAMHAGQGAAGAAVWLSELTWRDFYFMIL 300

Query: 334 HHHPRVTAKAFKPEYDAIKWEHGKHAEELFAAWCEGRTGYPLVDAAMAQINQTGYMHNRL 393
           HHHPRVT  AFKPEYDAI+WE G  AE LFAAWCEGRTGYPLVDAAMAQINQ+GYMHNRL
Sbjct: 301 HHHPRVTRHAFKPEYDAIQWEQGPQAEALFAAWCEGRTGYPLVDAAMAQINQSGYMHNRL 360

Query: 394 RMVVASFLTKDLGIDWRWGEKYFAIHLNDFDLSANNGGWQWASSSGCDAQPYFRIFNPVT 453
           RMVVASFLTKDLGIDWRWGE+YFA HLNDFDL+ANNGGWQWASSSGCDAQPYFRIFNPVT
Sbjct: 361 RMVVASFLTKDLGIDWRWGERYFARHLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPVT 420

Query: 454 QSEKFDPDGKFIRRYLPQLAKLSDKRIHAPWTATPDERMSAGVTLGTNYPRPIVDHAQAR 513
           QSEKFDPDGKFIRRYLPQLAKLS+KRIHAPWTATPDERM AGV LG NYPRPIVDHAQAR
Sbjct: 421 QSEKFDPDGKFIRRYLPQLAKLSNKRIHAPWTATPDERMDAGVVLGQNYPRPIVDHAQAR 480

Query: 514 ERTLERYAVVKKTE 527
           ERTL RYAVVKK E
Sbjct: 481 ERTLARYAVVKKAE 494


>gi|300309758|ref|YP_003773850.1| deoxyribodipyrimidine photolyase
           [Herbaspirillum seropedicae SmR1]
          Length = 439

 Score = 69.3 bits (168), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 88/192 (45%), Gaps = 26/192 (13%)

Query: 266 RIGAYGTARDF--PAVKGPSYLSIHLRFGTVSIR-----TLARAAMQAMHAGQGAAGAAV 318
           R GAY   R+    AV G   LS +L  G VS+R        R  ++  H          
Sbjct: 57  RPGAYARTRNSLDGAVTG---LSPYLTHGMVSLRDVLAGVCQRYPLEVQHK--------- 104

Query: 319 WLSELTWRDFYFMILHHHPRVTAKAFKPEYDAIKWEHGKHAEELFAAWCEGRTGYPLVDA 378
           ++ EL WR FY  +     R  A+ F     A       +A EL      G TG P++D 
Sbjct: 105 FVYELGWRAFYRYVWS---RRGARIFD-SLHAGPLPEAAYARELPDDIRAGATGVPVIDQ 160

Query: 379 AMAQINQTGYMHNRLRMVVASFLTKDLGIDWRWGEKYFAIHLNDFDLSANNGGWQWASSS 438
           A+  +  TG +HN  RM +AS++     + WR G  +   HL D DL++N+  WQW + +
Sbjct: 161 AVRTLYATGNLHNHARMWLASYVVHLRKVHWRAGADWMVGHLLDGDLASNHLSWQWVAGT 220

Query: 439 GCDAQPYFRIFN 450
           G   +PY  +FN
Sbjct: 221 GSH-KPY--LFN 229


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,630,169
Number of extensions: 66700
Number of successful extensions: 176
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 2
Length of query: 530
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 440
Effective length of database: 1,193,720
Effective search space: 525236800
Effective search space used: 525236800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)