BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0151.p
         (764 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311187|ref|YP_003775279.1| exoribonuclease RNAse R protein...  1511   0.0  

>gi|300311187|ref|YP_003775279.1| exoribonuclease RNAse R protein
           [Herbaspirillum seropedicae SmR1]
          Length = 839

 Score = 1511 bits (3912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 739/757 (97%), Positives = 752/757 (99%)

Query: 1   LSQFPYSIPSREEILGILRTSSGAQNAAALAAALGVKPEEMDGLTRRLNAMERDGQIKPD 60
           +SQFPYSIPSREEILGILRTSSGAQNAAALAAALGVKPEEMDGLTRRLNAMERDGQIKPD
Sbjct: 1   MSQFPYSIPSREEILGILRTSSGAQNAAALAAALGVKPEEMDGLTRRLNAMERDGQIKPD 60

Query: 61  RAGNYKLTHSPDFILGRVSAHRDGFGFLLPDEGADDLFLPEKEMQKVMHGDRVQARITGT 120
           RAG+YKLTHSPDFILGRVS+HRDGFGFLLPD+G+DDLFLPEKEMQKVMHGDRVQARI GT
Sbjct: 61  RAGHYKLTHSPDFILGRVSSHRDGFGFLLPDDGSDDLFLPEKEMQKVMHGDRVQARIVGT 120

Query: 121 DRRGRPEGTIVEVVERANTHVIGRLLNENGVWVVAPEDKRIGHDVLLAGPPGKAKAGQVV 180
           DRRGRPEGTIVEVVERANTHVIGRLLNENGVW+VAPEDKRIGHDVLLAGPPGKAKAGQVV
Sbjct: 121 DRRGRPEGTIVEVVERANTHVIGRLLNENGVWIVAPEDKRIGHDVLLAGPPGKAKAGQVV 180

Query: 181 SVELTEHPSRYTQPVGKIVEILGDIDDPGMEIEIAVRKYGVPHEFSEAAKKLAAKLPSEV 240
           SVELTEHPSRYTQPVGKIVEILGDIDDPGMEIEIAVRKYGVPHEFSEAAKKL+AKLPSEV
Sbjct: 181 SVELTEHPSRYTQPVGKIVEILGDIDDPGMEIEIAVRKYGVPHEFSEAAKKLSAKLPSEV 240

Query: 241 KAADLKDRVDLRDVPMVTIDGEDARDFDDAVYCEPVKIGRTKGYRLIVAIADVSHYVKPN 300
           KAADLKDRVDLRDVP+VTIDGEDARDFDDAVYCEPVKIGRTKGYRLIVAIADVSHYVKPN
Sbjct: 241 KAADLKDRVDLRDVPLVTIDGEDARDFDDAVYCEPVKIGRTKGYRLIVAIADVSHYVKPN 300

Query: 301 DALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLTLVCDAVITAKGEIKAYQ 360
           DALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLTLVCDAVITAKGEIKAYQ
Sbjct: 301 DALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLTLVCDAVITAKGEIKAYQ 360

Query: 361 FYPAVIHSAARLTYTEVASILANTKGPEAARRIGLVPHLTHLYEVFQALLTARQARGAID 420
           FYPAVIHSAARLTYTEVASILANTKGPEAARRIGLVPHLTHLYEVFQALLTARQARGAID
Sbjct: 361 FYPAVIHSAARLTYTEVASILANTKGPEAARRIGLVPHLTHLYEVFQALLTARQARGAID 420

Query: 421 FETTETYIVCNAAGKIEKILPRTRNDAHRLIEECMLAANVCAADLLKRHDHPALYRVHAG 480
           FETTETYIVCNAAGKIEKILPRTRNDAHRLIEECMLAANVCAADLLKRHDHPALYR+HAG
Sbjct: 421 FETTETYIVCNAAGKIEKILPRTRNDAHRLIEECMLAANVCAADLLKRHDHPALYRIHAG 480

Query: 481 PTKEKLTQLRTFLKQIGLTLGGGDTPSASDYAELMPKVKARPDAVLIQTMLLRSMQQAVY 540
           PTKEKLT LRTFLKQ+GLTLGGGDTPSASDYAELMPKVKARPDAVLIQTMLLRSMQQAVY
Sbjct: 481 PTKEKLTTLRTFLKQVGLTLGGGDTPSASDYAELMPKVKARPDAVLIQTMLLRSMQQAVY 540

Query: 541 SPDNIGHFGLSYESYAHFTSPIRRYPDLLTHRAIKAVLQGKRYEPKGIDSTALNTSISPA 600
           SPDNIGHFGLSYESYAHFTSPIRRYPDLLTHRAIKAVLQGKRYEPKGIDS ALNTSISPA
Sbjct: 541 SPDNIGHFGLSYESYAHFTSPIRRYPDLLTHRAIKAVLQGKRYEPKGIDSGALNTSISPA 600

Query: 601 ARKAQALQRATDKAAGKKPRGESALAIWEALGLHCSANERRADEASRDVEAWLKCYFIRD 660
           ARKAQA QRA DKAAGKKPRGESALAIWEALGLHCSANERRADEASRDVEAWLKCYFIRD
Sbjct: 601 ARKAQAQQRAADKAAGKKPRGESALAIWEALGLHCSANERRADEASRDVEAWLKCYFIRD 660

Query: 661 KLGEEFTGTIAGVATFGIFVQLDALYIEGLVHVTELGADYFQYDEARHELRGERTGIRYQ 720
           KLGEEFTGTI+GVATFGIFVQLDALYIEGLVHVTELGADYFQYDEARHELRGERTGIRYQ
Sbjct: 661 KLGEEFTGTISGVATFGIFVQLDALYIEGLVHVTELGADYFQYDEARHELRGERTGIRYQ 720

Query: 721 LTDRVTVQVSRVDLDARKIDLALVNEPGIRTLIKNEA 757
           LTDRVTVQVSRVDLDARKIDL+LVNEPGIRTL+KNEA
Sbjct: 721 LTDRVTVQVSRVDLDARKIDLSLVNEPGIRTLLKNEA 757


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,414,157
Number of extensions: 105658
Number of successful extensions: 285
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 285
Number of HSP's successfully gapped: 1
Length of query: 764
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 671
Effective length of database: 1,179,515
Effective search space: 791454565
Effective search space used: 791454565
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 134 (56.2 bits)