BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0144.p
         (405 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311193|ref|YP_003775285.1| hypothetical protein Hsero_1868...   771   0.0  

>gi|300311193|ref|YP_003775285.1| hypothetical protein Hsero_1868
           [Herbaspirillum seropedicae SmR1]
          Length = 399

 Score =  771 bits (1991), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/399 (94%), Positives = 390/399 (97%)

Query: 7   MLCLAGLPAMGSEASSSSIPPQGNTAGAPAAKPDPEALLIDIYKDLGANRLREAQAKADA 66
           MLCLAGLP++GS ASSSSIPPQ   AGAP AKPDPEALLIDIYKDLGANRLREAQAKADA
Sbjct: 1   MLCLAGLPSVGSVASSSSIPPQSAPAGAPVAKPDPEALLIDIYKDLGANRLREAQAKADA 60

Query: 67  LVAAYPTFRLGHLVRGDLLLMHARPVRNFGAMADGPGDKLKELRDEAMVRIRSLQEKPDP 126
           LVAAYPTFRLGHLVRGDLLLMHARPVRNFGAMADGP DKLKELRDEAMVRIRSLQEKPDP
Sbjct: 61  LVAAYPTFRLGHLVRGDLLLMHARPVRNFGAMADGPADKLKELRDEAMVRIRSLQEKPDP 120

Query: 127 KLIPKAVLQVGEDQKNVLVVDTTRSRLYVYENQGGELKYMTDYYVSQGRFGANKTKSGDQ 186
            LIPKAVLQVGEDQKNVLVVDTTRSR+YVYENQGGELK+ TD+Y+SQGRFGANK+KSGDQ
Sbjct: 121 NLIPKAVLQVGEDQKNVLVVDTTRSRMYVYENQGGELKFQTDFYISQGRFGANKSKSGDQ 180

Query: 187 RTPIGVYYVNNRIPGPKLPDFYGTGALPLSYPNEWDKRNGRSGYGIWLHGTPSDNFSRPP 246
           RTPIGVYYVNNRIPGPKLPDFYGTGALPLSYPNEWDKRNGRSGYGIWLHGTPSDNFSRPP
Sbjct: 181 RTPIGVYYVNNRIPGPKLPDFYGTGALPLSYPNEWDKRNGRSGYGIWLHGTPSDNFSRPP 240

Query: 247 LSSDGCVVLANPDLQSLYSTAEVGKTVVVISQHVQFVDKSEWAKQRDAASAMLEQWGQSL 306
           LSSDGCVVLANPDLQSLYSTAEVGKTVVVISQHVQFVDK+EWA+QRDAASA+LEQWGQSL
Sbjct: 241 LSSDGCVVLANPDLQSLYSTAEVGKTVVVISQHVQFVDKNEWARQRDAASAILEQWGQSL 300

Query: 307 ENADADKVLSYYSPEFRSAQGENLATWFGRQQKSLNGARYTSVKLRDVSLFRYPGTPEDM 366
           ENAD +KVLSYYSPEFRSAQGE+LATWFGRQQKSLNGARYTSVKLRDVSLFRYPGTPEDM
Sbjct: 301 ENADPEKVLSYYSPEFRSAQGESLATWFGRQQKSLNGARYTSVKLRDVSLFRYPGTPEDM 360

Query: 367 IVSTFTQESAVGKSKNAIRKRQYWVREGSQWKIIYEGNA 405
           IVSTFTQESAVGKSKNAIRKRQYWVREGSQWKIIYEGNA
Sbjct: 361 IVSTFTQESAVGKSKNAIRKRQYWVREGSQWKIIYEGNA 399


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.133    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,327,671
Number of extensions: 58357
Number of successful extensions: 178
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 318
Effective length of database: 1,207,925
Effective search space: 384120150
Effective search space used: 384120150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)