BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0143.p
         (509 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311194|ref|YP_003775286.1| signal peptide protein [Herbasp...   382   e-107

>gi|300311194|ref|YP_003775286.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 539

 Score =  382 bits (980), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 224/237 (94%), Positives = 233/237 (98%)

Query: 1   LISKTAHKTAVLSSLVAALFGVPATLAHASEMSDINKLMRAGQYADALTKTDAVLAKHPR 60
           LISKTAHKTAV+SSLVAALF  PA+LAHASEMSDINKLMRAGQYA+ALTKTDAVLAKHPR
Sbjct: 17  LISKTAHKTAVMSSLVAALFAAPASLAHASEMSDINKLMRAGQYAEALTKTDAVLAKHPR 76

Query: 61  DAQLRFTKGLILAEQNRSAEAIAVFSKLTEDFPDLPEPYNNLAVLYAADGQYDKARAALD 120
           DAQLRFTKGLILAEQNRSAEAIAVF+KLTEDFPDLPEPYNNLAVLYAADGQYDKARAALD
Sbjct: 77  DAQLRFTKGLILAEQNRSAEAIAVFTKLTEDFPDLPEPYNNLAVLYAADGQYDKARAALD 136

Query: 121 MAMRTNPTYATALENLGDVYAKLASQAYDKALQIDPGANVPQPKLTLLRSLNGNTTGGTV 180
           MAMRTNPTYATALENLGDVYAKLASQAYDKALQIDPGANVPQPKLTLLRSLNGNTTGGTV
Sbjct: 137 MAMRTNPTYATALENLGDVYAKLASQAYDKALQIDPGANVPQPKLTLLRSLNGNTTGGTV 196

Query: 181 PRLASAASAQRDAKAKAEAAAAEQQERNRALAAEKLAQQAAADKAEAEKTAISKATS 237
           PRLASAA+AQR+AKAKAEA+AAEQQ+R +ALAAEKLAQQAAADKAEAEK AISKATS
Sbjct: 197 PRLASAAAAQREAKAKAEASAAEQQQRAKALAAEKLAQQAAADKAEAEKNAISKATS 253


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.307    0.118    0.306 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 879,085
Number of extensions: 31372
Number of successful extensions: 150
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 2
Length of query: 509
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 420
Effective length of database: 1,198,455
Effective search space: 503351100
Effective search space used: 503351100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 133 (55.8 bits)